PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7305s0021.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 659aa    MW: 71260.8 Da    PI: 5.4443
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7305s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.91.5e-1092706582374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          +++++e+A+a+++g++e a+++Lar+s++ + ++++ ++l+ +++ AL+ r+++  ++l++     +++e   +++l +++l++e+sP++
  Bostr.7305s0021.1.p 270 RQTVMEIATAIAEGKTEIASEILARVSQTPNLRRNSEEKLVDFMVTALRYRINNPAESLAS-----PATELYGKKHLLSTQLLYELSPCF 354
                          6889**************************************************5555553.....333344899*************** PP

                 GRAS  92 kfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpeg..........ppslRiTgvgspesg......skeeleet 161
                          k+++++aN aIl+a+ ++      +H+iDfdi++G+Q+++Ll+aL++R++g          +p ++iT+v +++ g       +e+l+++
  Bostr.7305s0021.1.p 355 KLGFMAANLAILDAAGNNdegmMNLHVIDFDIGEGGQYVNLLHALSTRRNGnnqtqdqntkTPVVKITAVTNNSDGfvvgdgGEERLKAV 444
                          ***************9997755667**********************99666778888888***********88889****99******* PP

                 GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                          g+ L+++ ++lg++++fnv+++ rl dl+ e+L ++p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P+vv++veqe++ n++
  Bostr.7305s0021.1.p 445 GDLLTQLGDRLGISVSFNVVASLRLGDLSRESLGCEPDEPLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTIVEQEINSNTA 534
                          *******************8888******************************************************************* PP

                 GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                          sFl r++e++ +y al+ds+e+++p+++++r+kvE+  +gr++ n+vaceg +r+er+e ++kWr+r+++aGF+ +plsek+a+++k+ l
  Bostr.7305s0021.1.p 535 SFLGRVSESCACYGALLDSVESTVPSTNSDRAKVEEG-IGRKLINAVACEGIDRIERCEVFGKWRMRMSMAGFELMPLSEKIAESMKSRL 623
                          *************************************.***************************************************9 PP

                 GRAS 342 rkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          ++ k    g++v+e++g +++ W++r+L ++SaWr
  Bostr.7305s0021.1.p 624 SNGKrvHPGFTVKEDNGGVCFSWMGRTLAVASAWR 658
                          98877779**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.104243636IPR005202Transcription factor GRAS
PfamPF035145.1E-107270658IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MASGFSGGGG GPEFYGGGGG RSIPGGPGTV INVGNDNPQP TYRNQIPGIF LDQIGNRVTA  60
GHGFVGKRTL ADFQAAQQHQ QQQQQPFYNQ AALNAFLLRS VKARNYQNLQ SPSPLIDLTS  120
LNDMSFSQRY GLPVLRSQKT QQQQQSDLGL FGGIRMGFGS GNNNNNNNNN MKLTGVPCIA  180
PVQQNRVHES ENMLNSLREL EKQLLDDDDD ESYAQGGGDD DVSVITNSNS DWIQNLVTPN  240
PNPVSSSSPS SSSSSSSPST ASTTTSVCSR QTVMEIATAI AEGKTEIASE ILARVSQTPN  300
LRRNSEEKLV DFMVTALRYR INNPAESLAS PATELYGKKH LLSTQLLYEL SPCFKLGFMA  360
ANLAILDAAG NNDEGMMNLH VIDFDIGEGG QYVNLLHALS TRRNGNNQTQ DQNTKTPVVK  420
ITAVTNNSDG FVVGDGGEER LKAVGDLLTQ LGDRLGISVS FNVVASLRLG DLSRESLGCE  480
PDEPLAVNLA FKLYRVPDES VCTENPRDEL LRRVKGLKPR VVTIVEQEIN SNTASFLGRV  540
SESCACYGAL LDSVESTVPS TNSDRAKVEE GIGRKLINAV ACEGIDRIER CEVFGKWRMR  600
MSMAGFELMP LSEKIAESMK SRLSNGKRVH PGFTVKEDNG GVCFSWMGRT LAVASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-3424265865473Protein SHORT-ROOT
5b3h_B9e-3524265811419Protein SHORT-ROOT
5b3h_E9e-3524265811419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7305s0021.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0996860.0AY099686.1 Arabidopsis thaliana SCARECROW transcriptional regulator-like (At5g52510) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280138.10.0scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLR0EW310.0R0EW31_9BRAS; Uncharacterized protein
STRINGBostr.7305s0021.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8