PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7305s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 26898.5 Da PI: 9.8999 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.4e-16 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEd +l+ +v+ +G g+W+ I+r+ g++R +k+c++rw +yl Bostr.7305s0011.1.p 34 RGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYL 81 788*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.6e-16 | 87 | 132 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++l+++ +k+lG++ W++I+ +++ gRt++++k++w+++l Bostr.7305s0011.1.p 87 RGSMSPQEQDLIIRMHKLLGNR-WSLISGRLP-GRTDNEVKNYWNTHL 132 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.392 | 29 | 81 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 33 | 83 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.03E-28 | 33 | 128 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-14 | 34 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-22 | 35 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.88E-10 | 37 | 81 | No hit | No description |
PROSITE profile | PS51294 | 25.193 | 82 | 136 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-15 | 86 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 87 | 132 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 89 | 135 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.86E-10 | 89 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MRILLISSFT CKLWRQRENK NMEHEREGKS YVKRGLWKPE EDMILKSYVE THGEGNWADI 60 SRRSGLKRGG KSCRLRWKNY LRPNIKRGSM SPQEQDLIIR MHKLLGNRWS LISGRLPGRT 120 DNEVKNYWNT HLNKKSNSRK QNAPESIGRA TTFTDKPVMS TEVRRSHGEE GEGEENSIVR 180 NTWMEETNSF DYDVRIGSPL PLISHYPDNT LVFDPCFALT DLFPLLQDFP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-23 | 34 | 135 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7305s0011.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519637 | 0.0 | AY519637.1 Arabidopsis thaliana MYB transcription factor (At5g52600) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006282345.2 | 1e-142 | transcription factor MYB82 | ||||
Swissprot | Q9LTF7 | 1e-129 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | R0GVN8 | 1e-139 | R0GVN8_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.7305s0011.1.p | 1e-171 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 1e-128 | myb domain protein 82 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7305s0011.1.p |