PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7200s0128.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 215aa MW: 24876.7 Da PI: 4.2475 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 66.3 | 8.8e-21 | 8 | 141 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk. 88 lp G+rF+P+d e+ ++L+ k+ g+++++ +v +e+ di++ +P+dLp +++e++wyf++ + k++ t +n W tg+ Bostr.7200s0128.1.p 8 LPIGMRFRPSDLEIAAYFLTYKALGRHMKARTVPEEChDIFSRHPRDLPD--YGREEHWYFYCLKPKNQVT---TNS---YNLWIPTGEe 89 699***************************88888889***********3..35789*******9987654...333...246*****93 PP NAM 89 dkevlsk..kgelvglkktLvfy.........k..grapkgektdWvmheyr 127 ++evl+ +gelvg+k++++f + +++++ k +W+++e + Bostr.7200s0128.1.p 90 TEEVLDPkkNGELVGIKRSFAFIeneeeesdnNglSDEEEPPKYNWFLDEIS 141 4566665778899**********54444333313245555568888888766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-27 | 6 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.536 | 8 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.3E-10 | 9 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MGPTYRDLPI GMRFRPSDLE IAAYFLTYKA LGRHMKARTV PEECHDIFSR HPRDLPDYGR 60 EEHWYFYCLK PKNQVTTNSY NLWIPTGEET EEVLDPKKNG ELVGIKRSFA FIENEEEESD 120 NNGLSDEEEP PKYNWFLDEI SLPLTVVDTD WTLCHIFCKK IKPEFVNLHI IDSESESEEE 180 EEDESVDKPL AETLDLVREK DESTVLPPPP PASP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7200s0128.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_198925.1 | 3e-97 | NAC domain containing protein 95 | ||||
TrEMBL | Q9FLM0 | 6e-96 | Q9FLM0_ARATH; At5g41090 | ||||
STRING | Bostr.7200s0128.1.p | 1e-156 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8604 | 17 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41090.1 | 3e-96 | NAC domain containing protein 95 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7200s0128.1.p |