PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7200s0009.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 370aa    MW: 42406.1 Da    PI: 8.5702
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7200s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.9e-16160206148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+ Ede lv+ vk  G++ W++Ia++++ gR +kqc++rw+++l
  Bostr.7200s0009.1.p 160 KGQWTPTEDEMLVRMVKCNGMKKWTSIAKMFQ-GRVGKQCRERWHNHL 206
                          799*****************************.*************97 PP
2Myb_DNA-binding52.41.3e-16212254145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +++W++eEd++lv+++k+ G++ W+ Ia++++ gR+++ +k++w+
  Bostr.7200s0009.1.p 212 KNSWSEEEDQILVEVHKLVGNK-WTEIAKRLP-GRSENVVKNHWN 254
                          679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.895155206IPR017930Myb domain
SuperFamilySSF466892.89E-29159253IPR009057Homeodomain-like
SMARTSM007174.2E-13159208IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-25161212IPR009057Homeodomain-like
PfamPF139213.2E-16163220No hitNo description
CDDcd001674.12E-12163206No hitNo description
PROSITE profilePS5129425.562207261IPR017930Myb domain
SMARTSM007175.1E-16211259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-21213259IPR009057Homeodomain-like
CDDcd001671.22E-11214257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MYHQILISSI PNQNSGPYSW VIQNHLFSRL PSTEIPSKYP FMGITSYSNT NAFEEFQNNV  60
TNDLRFPMTY YTPFPVTSEG ISYDMHDFQG NTMMDDIAQN QGLCIGSHEP ALVHVMVKSQ  120
QFNVSEPEGI NKSITKETIN RRQDQVVIKT DQKKKGITIK GQWTPTEDEM LVRMVKCNGM  180
KKWTSIAKMF QGRVGKQCRE RWHNHLRPDI KKNSWSEEED QILVEVHKLV GNKWTEIAKR  240
LPGRSENVVK NHWNATKRRL LSIRNKRSDA LPPRNNALEN YIMSTITINN NVLMNREADT  300
ITTAKAENNK CEDVVDGVMN LNLDARTQTA ATVIDASTAS VYVPEKTAFA WGKVYEPMDD  360
TWMHMNGWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-421592596106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes the motif 5'-TAACGG-3' in the promoter of target genes (PubMed:27681170). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner (PubMed:18695688). Together with MYB118, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:27681170}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7200s0009.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by LEC2 but repressed by MYB118. {ECO:0000269|PubMed:27681170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_568581.10.0myb domain protein 115
SwissprotQ1PDP90.0MY115_ARATH; Transcription factor MYB115
TrEMBLR0H2H41e-161R0H2H4_9BRAS; Uncharacterized protein
STRINGBostr.7200s0009.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60522643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40360.10.0myb domain protein 115
Publications ? help Back to Top
  1. Troncoso-Ponce MA, et al.
    Transcriptional Activation of Two Delta-9 Palmitoyl-ACP Desaturase Genes by MYB115 and MYB118 Is Critical for Biosynthesis of Omega-7 Monounsaturated Fatty Acids in the Endosperm of Arabidopsis Seeds.
    Plant Cell, 2016. 28(10): p. 2666-2682
    [PMID:27681170]
  2. Ettaki H, et al.
    Overexpression of MYB115, AAD2, or AAD3 in Arabidopsis thaliana seeds yields contrasting omega-7 contents.
    PLoS ONE, 2018. 13(1): p. e0192156
    [PMID:29381741]