PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.7128s0657.2.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Nin-like

Protein Properties

Length: 847aa MW: 94405.1 Da PI: 5.3137

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.7128s0657.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5e-29	559	609	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Bostr.7128s0657.2.p 559 DKTITLDVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGIQRWPSRKIKKV 609 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.109	543	629	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-25	561	609	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.68E-23	737	834	No hit	No description
PROSITE profile	PS51745	29.358	746	829	IPR000270	PB1 domain
SMART	SM00666	5.5E-27	746	829	IPR000270	PB1 domain
Pfam	PF00564	1.1E-19	747	828	IPR000270	PB1 domain
CDD	cd06407	6.82E-44	747	827	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.4E-21	747	826	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 847 aa Download sequence Send to blast
MEDSFLQTEN AIMDSEFMDG LLLDGCWLET TDGSEFLNVA PSTSSVSPFD PSSFMWSPTQ 60 DTSAICTSGV VSQMYGQDCA ERSSLDDFQW NKRWWIGPGG GGSSVTERLV QAVEHIKDYT 120 TERGSLIQLW VPVNRGGKRV LTTKEQPFSH DPMCQRLANY REISVNYHFP AEQDDSKAVA 180 GLPGRVFLGK LPEWTPDVRF FKSEEYPRVH HAQDCDVRGT LAIPVFEQGS KICLGVIEVV 240 MTTEMVKLRP ELESICRALQ AVDLRSTELP IPPSLKGCDL SYKAALPEIR NLLRCACETH 300 KLPLAQTWVS CLQQSKSGCR HNDENYIHCV STIDDACYVG DPTVREFHEA CSEHHLLKGQ 360 GVAGQAFLTN GPCFSSDVSN YKKSEYPLSH HANMYGLHGV VAIRLRCIHT GSSDFVLEFF 420 LPKDCNDLEE QRKMLNALST IMAHVPRSLR TVTDKELEEE SEVIEREEIV TPKIENASEL 480 QHLHGNSPWS ASLEEIQRSN SSSNPQNLGL VFDGGDKPND GFGLKRGFDY TMDSNVNESS 540 TFSSGGFSMM TEKKRTKADK TITLDVLRQY FAGSLKDAAK NIGVCPTTLK RICRQHGIQR 600 WPSRKIKKVG HSLQKIQRVI DSVQGVSGPL PIGSFYANFP NLVSQSQNPS QQAKTSPPPP 660 PPVELAKSPV SSYSQSSNSS QCCSSETQLN SGATTDPASA DVVGSLKKTS SEIELQSSSL 720 DETILTLSSL ENIPQGTNLS SQDDDFLRIK VSYGEEKIRF RMPNSRRLTD LLWEIGKRFS 780 IEDMSRYDLK YLDEDNEWVL LTCDEDVEEC VDVCRTTPSH TIKLLLQVSS HHFPERSSAT 840 EYSLWH*

Sequence ? help Back to Top

Protein Sequence Length: 847 aa Download sequence Send to blast

MEDSFLQTEN AIMDSEFMDG LLLDGCWLET TDGSEFLNVA PSTSSVSPFD PSSFMWSPTQ  60
DTSAICTSGV VSQMYGQDCA ERSSLDDFQW NKRWWIGPGG GGSSVTERLV QAVEHIKDYT  120
TERGSLIQLW VPVNRGGKRV LTTKEQPFSH DPMCQRLANY REISVNYHFP AEQDDSKAVA  180
GLPGRVFLGK LPEWTPDVRF FKSEEYPRVH HAQDCDVRGT LAIPVFEQGS KICLGVIEVV  240
MTTEMVKLRP ELESICRALQ AVDLRSTELP IPPSLKGCDL SYKAALPEIR NLLRCACETH  300
KLPLAQTWVS CLQQSKSGCR HNDENYIHCV STIDDACYVG DPTVREFHEA CSEHHLLKGQ  360
GVAGQAFLTN GPCFSSDVSN YKKSEYPLSH HANMYGLHGV VAIRLRCIHT GSSDFVLEFF  420
LPKDCNDLEE QRKMLNALST IMAHVPRSLR TVTDKELEEE SEVIEREEIV TPKIENASEL  480
QHLHGNSPWS ASLEEIQRSN SSSNPQNLGL VFDGGDKPND GFGLKRGFDY TMDSNVNESS  540
TFSSGGFSMM TEKKRTKADK TITLDVLRQY FAGSLKDAAK NIGVCPTTLK RICRQHGIQR  600
WPSRKIKKVG HSLQKIQRVI DSVQGVSGPL PIGSFYANFP NLVSQSQNPS QQAKTSPPPP  660
PPVELAKSPV SSYSQSSNSS QCCSSETQLN SGATTDPASA DVVGSLKKTS SEIELQSSSL  720
DETILTLSSL ENIPQGTNLS SQDDDFLRIK VSYGEEKIRF RMPNSRRLTD LLWEIGKRFS  780
IEDMSRYDLK YLDEDNEWVL LTCDEDVEEC VDVCRTTPSH TIKLLLQVSS HHFPERSSAT  840
EYSLWH*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.7128s0657.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY091015	0.0	AY091015.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.
GenBank	AY117237	0.0	AY117237.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006306759.1	0.0	protein NLP4
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	R0GUM3	0.0	R0GUM3_9BRAS; Uncharacterized protein
STRING	Bostr.7128s0657.1.p	0.0	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Bostr.7128s0657.2.p