PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7128s0480.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 258aa    MW: 29840.6 Da    PI: 6.6015
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7128s0480.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.2e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEd++lv +++++G  +W++ +r+ g+ R++k+c++rw++yl
  Bostr.7128s0480.1.p 14 KGEWTAEEDQKLVAYINEHGFCDWRSLPRRAGLQRCGKSCRLRWLNYL 61
                         799*******************************************97 PP
2Myb_DNA-binding56.85.1e-1867111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T++E+e ++++++ lG++ W++Ia+ m+ +Rt++++k++w++ 
  Bostr.7128s0480.1.p  67 RGKFTPQEEEDIIKLHAVLGNR-WAAIAKQMQ-NRTDNDIKNHWNSC 111
                          89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.979961IPR017930Myb domain
SuperFamilySSF466893.88E-2911108IPR009057Homeodomain-like
SMARTSM007175.9E-141363IPR001005SANT/Myb domain
PfamPF002496.2E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-231568IPR009057Homeodomain-like
CDDcd001678.09E-111661No hitNo description
PROSITE profilePS5129426.10362116IPR017930Myb domain
SMARTSM007174.6E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1667111IPR001005SANT/Myb domain
CDDcd001671.04E-969109No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRSTWFDVD GMKKGEWTAE EDQKLVAYIN EHGFCDWRSL PRRAGLQRCG KSCRLRWLNY  60
LRPGIRRGKF TPQEEEDIIK LHAVLGNRWA AIAKQMQNRT DNDIKNHWNS CLKKRLSRKG  120
IDPMTHEPIK HLTVKTTNED CGSSSTTTSP SMESCPYSGS SRLLNKLAAG ISSRQHSLDR  180
IKYILSNPIV RSSDQVEEKE EERESNMDHK IDGGEEGDIQ IWDEEIRRLM EIDVMEYEMT  240
SYDSVMYEST HILDHLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-2691162108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7128s0480.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0651660.0AY065166.1 Arabidopsis thaliana Putative MYB47 transcription factor (F6a14.18) mRNA, complete cds.
GenBankAY1145790.0AY114579.1 Arabidopsis thaliana Putative MYB47 transcription factor (At1g18710) mRNA, complete cds.
GenBankAY5195560.0AY519556.1 Arabidopsis thaliana MYB transcription factor (At1g18710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498279.11e-160PREDICTED: transcription factor MYB34-like
SwissprotQ9LE638e-60MY106_ARATH; Transcription factor MYB106
TrEMBLD7KH581e-148D7KH58_ARALL; AtMYB47
STRINGBostr.7128s0480.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.11e-144myb domain protein 47