PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7128s0434.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB_related | ||||||||
Protein Properties | Length: 352aa MW: 39009.4 Da PI: 8.2186 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 50 | 94 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W++eE+e++++a+k++G g W+ I +++g ++t+ q++s+ qk+ Bostr.7128s0434.1.p 50 REKWSEEEHERFLEAIKLYGRG-WRQIEEHIG-TKTAVQIRSHAQKF 94 789*******************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.36E-16 | 44 | 99 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.184 | 45 | 99 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-10 | 46 | 96 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-16 | 48 | 97 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.8E-13 | 49 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-15 | 50 | 93 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.20E-11 | 52 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MAAEDRSEEL TSNVENGSCN SNEGTNPETS SNWIENVVKV RKPYTVTKQR EKWSEEEHER 60 FLEAIKLYGR GWRQIEEHIG TKTAVQIRSH AQKFFSKMTH EADDRSEGSN KAIVIPPPRP 120 KRKPAHPYPR KSPIPYSLSP PSNLSAMEKG TKSPTSVLSS FASEDQINRC SSPNSCTSDI 180 QSIGGTSINK TNDHATSKQS LKEDAANGST PMSSIMLFGK IVRVAEKSHK PSSYIDDDDL 240 KSMTGQENHC SGIKNSTLHI DSRHVDTDLA LGIWETSCTG SNAFGSVTEM SENLEKNAEK 300 RLSFLEKQGS CNLASGFRPY KRCLSEREVT SSLSMVTSEE QKSRRRARIC S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00146 | DAP | Transfer from AT1G18330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7128s0434.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB115696 | 0.0 | AB115696.1 Arabidopsis thaliana EPR1 mRNA for MYB-related transcription factor EPR1, complete cds. | |||
GenBank | AY063952 | 0.0 | AY063952.1 Arabidopsis thaliana unknown protein (At1g18330) mRNA, complete cds. | |||
GenBank | AY114070 | 0.0 | AY114070.1 Arabidopsis thaliana unknown protein (At1g18330) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010477007.1 | 0.0 | PREDICTED: protein REVEILLE 7 | ||||
Swissprot | B3H5A8 | 0.0 | RVE7_ARATH; Protein REVEILLE 7 | ||||
TrEMBL | R0GQU5 | 0.0 | R0GQU5_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Bostr.7128s0434.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9174 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18330.1 | 0.0 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7128s0434.1.p |
Publications ? help Back to Top | |||
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