PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7128s0363.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 291aa    MW: 32166.7 Da    PI: 8.6251
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7128s0363.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.3e-13556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         +++WT+eE+e l+ +v+++G+g Wk I r         +R+  ++k++w+++
  Bostr.7128s0363.2.p  5 KLKWTAEEEEALLAGVRKHGPGKWKNILRDHDfaehlSNRSNIDLKDKWRNL 56
                         689************************99999999998************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.818162IPR017930Myb domain
SuperFamilySSF466892.23E-16358IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-14456IPR009057Homeodomain-like
SMARTSM007171.1E-7459IPR001005SANT/Myb domain
CDDcd116603.40E-21756No hitNo description
PfamPF139211.6E-9858No hitNo description
SMARTSM005261.5E-18124189IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.6E-12125191IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.31E-15125200IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.529126194IPR005818Linker histone H1/H5, domain H15
PfamPF005388.0E-10128187IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGNQKLKWTA EEEEALLAGV RKHGPGKWKN ILRDHDFAEH LSNRSNIDLK DKWRNLSVAP  60
GIQGSKDKIR TPKIKAAAFH LASAAAAATC TLTLSAIPSP VATLPRSNSS DLSIDDSCNI  120
VVDAKNAPRY DGMIFEALSA LTDVNGSDVS AIFNFIEQRH EVPPNFRRIL SSRLRRLAAQ  180
GKLEKTQNFY KMNDNSLVTR TPLVARPKEM NVKLRQTNSQ GPSVSQEMVG EASITAAYKL  240
VEVENKLDVV KGSSEEIDRM TKLAEHAEDM LVIAREMHEE CCQGKIKFLD *
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7128s0363.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1185330.0AK118533.1 Arabidopsis thaliana At1g17520 mRNA for putative myb-related DNA-binding protein, complete cds, clone: RAFL19-76-F04.
GenBankAY5195380.0AY519538.1 Arabidopsis thaliana MYB transcription factor (At1g17520) mRNA, complete cds.
GenBankBT0052900.0BT005290.1 Arabidopsis thaliana At1g17520 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304059.11e-167telomere repeat-binding factor 4 isoform X4
SwissprotF4I7L11e-156TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLR0GM011e-165R0GM01_9BRAS; Uncharacterized protein
STRINGBostr.7128s0363.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-155MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]