PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7128s0357.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 624aa    MW: 69405.6 Da    PI: 5.8918
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7128s0357.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.8e-08520568348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E  +lv++v ++G g W+ I r        Rt  ++k++w++++
  Bostr.7128s0357.1.p 520 AWTVSEVVKLVEGVSKYGVGKWSEIKRLSFssyAYRTSVDLKDKWRNLR 568
                          7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.816513572IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-11515574IPR009057Homeodomain-like
SuperFamilySSF466891.87E-15515575IPR009057Homeodomain-like
SMARTSM007171.1E-8517570IPR001005SANT/Myb domain
CDDcd116603.33E-20519569No hitNo description
PfamPF139216.0E-6521575No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MCGTVEDYGE MFQDSIFQSR SGSLSSTNQT GNPVAYKLVR VARDGRLVPA TDEEMLEVKD  60
LLENNENDMP VLPDPIQTEG YIPDEGSPSQ FLHLESFEAL FESETAKAYT ENLNPGLFQS  120
ETAEAYTEIL NSRLESKEEL MNGSQMLFAL PETKFQISNV LCGNEEQVQS EILLRESVRF  180
PSNGCSMNQS RDVSPYSNAT GSPKEPALST AALKPEFSRV AGKICLDNLS IKALQETFRA  240
TFGRETTCKD KQWLTRRITM GLINSCVVPT TSLTIFDNKL IGGGEDTSDA FNKDTVDEER  300
ATESKDTPSS PDCIKGHSND FGHSPVETFV DHYSGNEDFE GEYRSAKRVR KPTRRYIEEI  360
SKTDEKQQSD ESMIPSKDQS SIQAVSSGGR VVVTRMVSLA GSRIQVPYVS HVRRSRPREN  420
IMALGEFHSK SCEVKATPDE SNLNLSPSQL NNDVNRVLGV KSASRPVQKE SNKDHLKPIF  480
TEVDQDIMEP ENLDSSGDSS DDNNLVPITQ GAIRRKHHRA WTVSEVVKLV EGVSKYGVGK  540
WSEIKRLSFS SYAYRTSVDL KDKWRNLRKA SFSQTASNRM GGLKKHGSMA IPSHIMLQVR  600
ELAQKQSPVS KARVVKGSRN CFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7128s0357.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476898.10.0PREDICTED: uncharacterized protein LOC104756078 isoform X1
TrEMBLR0GPJ10.0R0GPJ1_9BRAS; Uncharacterized protein
STRINGBostr.7128s0357.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.20.0TRF-like 3