PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7128s0312.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | STAT | ||||||||
Protein Properties | Length: 678aa MW: 76582.2 Da PI: 4.7596 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 186.8 | 2.6e-58 | 221 | 339 | 1 | 117 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisq.LsskcdnrLfrikfei 89 ldvvl+n++gqpv+kdv+vvasLlyadsg++vek +d+eapLL+sy+Gvefs+ed+p++ll+G+asfklkisq Lssk+d+rLf+ikfei Bostr.7128s0312.1.p 221 LDVVLTNTIGQPVHKDVKVVASLLYADSGTPVEKLSDSEAPLLVSYEGVEFSAEDKPCDLLNGCASFKLKISQeLSSKSDKRLFCIKFEI 310 8***********************************************************************99**************** PP STAT 90 pklkk.ypfleavskpirCisrsrntrss 117 p++k+ ypfle+v+++irCisr++++ + Bostr.7128s0312.1.p 311 PEVKAyYPFLETVTNQIRCISRNHDSFTP 339 ****988****************997655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF49899 | 1.74E-7 | 29 | 165 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
CDD | cd10338 | 3.08E-68 | 572 | 677 | No hit | No description |
SuperFamily | SSF55550 | 7.68E-13 | 580 | 669 | IPR000980 | SH2 domain |
Gene3D | G3DSA:3.30.505.10 | 1.5E-9 | 580 | 639 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.82 | 583 | 677 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 678 aa Download sequence Send to blast |
MAGDCAIDTE KYSLLEDFNV DVEVQNQEFE SFSLCFWVYL LDSTTYPSTI IRQVHSDMSV 60 SAPFLVLDEN KKMMLLPLTL LHKEAPDPVN ISSWTEVPNV STTAEFPLQK WVHVGCEVSR 120 NYMRLHICGE IVGEQVLTSL MTNGTNLDCA RKISLFSVGG DGYSVQGFIH CAEVVPSNVH 180 ANYHYTKDPP LWLSVDKPSA SGIELDEDGV WSIVGGTFCS LDVVLTNTIG QPVHKDVKVV 240 ASLLYADSGT PVEKLSDSEA PLLVSYEGVE FSAEDKPCDL LNGCASFKLK ISQELSSKSD 300 KRLFCIKFEI PEVKAYYPFL ETVTNQIRCI SRNHDSFTPK RSNHIDYSLD GGEQELTSSN 360 GTSDILHSSS SMKRIRVGEA KVSESEYENG NGTSMEWRPQ NHEEEEEDNS STDSENTEIR 420 DSTVFRRYTI SDSMIFRYCL ANLTERSLLL KEITNNSSDE EVSEFADQVS LYSGCSHHGY 480 QIKMARKLIA EGTNAWVLIS RNYQHVHWDN VVIEIEEHFM RIAKCSSRSL TYQDFELLRR 540 ICGCYEYITQ ENFEKMWCWL FPVASAISRG LINGMWRSAS PKWIEGFVTK EEAERSLQNQ 600 EPGTFILRFP ASRSWPHPDA GSLVVTYVGH DLVIHHRLLT IDHICDSSER YTDAKPLQDM 660 LLAEPELSRL GRIIRGI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7128s0312.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT046180 | 0.0 | BT046180.1 Arabidopsis thaliana unknown protein (At1g17040) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020872922.1 | 0.0 | uncharacterized protein LOC9306855 | ||||
Swissprot | B5X561 | 0.0 | SHA_ARATH; SH2 domain-containing protein A | ||||
TrEMBL | R0IGD0 | 0.0 | R0IGD0_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.7128s0312.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5205 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17040.1 | 0.0 | SH2 domain protein A |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7128s0312.1.p |
Publications ? help Back to Top | |||
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