PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7128s0312.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family STAT
Protein Properties Length: 678aa    MW: 76582.2 Da    PI: 4.7596
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7128s0312.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT186.82.6e-582213391117
                 STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisq.LsskcdnrLfrikfei 89 
                          ldvvl+n++gqpv+kdv+vvasLlyadsg++vek +d+eapLL+sy+Gvefs+ed+p++ll+G+asfklkisq Lssk+d+rLf+ikfei
  Bostr.7128s0312.1.p 221 LDVVLTNTIGQPVHKDVKVVASLLYADSGTPVEKLSDSEAPLLVSYEGVEFSAEDKPCDLLNGCASFKLKISQeLSSKSDKRLFCIKFEI 310
                          8***********************************************************************99**************** PP

                 STAT  90 pklkk.ypfleavskpirCisrsrntrss 117
                          p++k+ ypfle+v+++irCisr++++ + 
  Bostr.7128s0312.1.p 311 PEVKAyYPFLETVTNQIRCISRNHDSFTP 339
                          ****988****************997655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498991.74E-729165IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103383.08E-68572677No hitNo description
SuperFamilySSF555507.68E-13580669IPR000980SH2 domain
Gene3DG3DSA:3.30.505.101.5E-9580639IPR000980SH2 domain
PROSITE profilePS5000110.82583677IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MAGDCAIDTE KYSLLEDFNV DVEVQNQEFE SFSLCFWVYL LDSTTYPSTI IRQVHSDMSV  60
SAPFLVLDEN KKMMLLPLTL LHKEAPDPVN ISSWTEVPNV STTAEFPLQK WVHVGCEVSR  120
NYMRLHICGE IVGEQVLTSL MTNGTNLDCA RKISLFSVGG DGYSVQGFIH CAEVVPSNVH  180
ANYHYTKDPP LWLSVDKPSA SGIELDEDGV WSIVGGTFCS LDVVLTNTIG QPVHKDVKVV  240
ASLLYADSGT PVEKLSDSEA PLLVSYEGVE FSAEDKPCDL LNGCASFKLK ISQELSSKSD  300
KRLFCIKFEI PEVKAYYPFL ETVTNQIRCI SRNHDSFTPK RSNHIDYSLD GGEQELTSSN  360
GTSDILHSSS SMKRIRVGEA KVSESEYENG NGTSMEWRPQ NHEEEEEDNS STDSENTEIR  420
DSTVFRRYTI SDSMIFRYCL ANLTERSLLL KEITNNSSDE EVSEFADQVS LYSGCSHHGY  480
QIKMARKLIA EGTNAWVLIS RNYQHVHWDN VVIEIEEHFM RIAKCSSRSL TYQDFELLRR  540
ICGCYEYITQ ENFEKMWCWL FPVASAISRG LINGMWRSAS PKWIEGFVTK EEAERSLQNQ  600
EPGTFILRFP ASRSWPHPDA GSLVVTYVGH DLVIHHRLLT IDHICDSSER YTDAKPLQDM  660
LLAEPELSRL GRIIRGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7128s0312.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0461800.0BT046180.1 Arabidopsis thaliana unknown protein (At1g17040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872922.10.0uncharacterized protein LOC9306855
SwissprotB5X5610.0SHA_ARATH; SH2 domain-containing protein A
TrEMBLR0IGD00.0R0IGD0_9BRAS; Uncharacterized protein
STRINGBostr.7128s0312.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.10.0SH2 domain protein A
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]