PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7128s0269.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | B3 | ||||||||
Protein Properties | Length: 136aa MW: 15770.7 Da PI: 4.2919 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.9 | 4.4e-19 | 9 | 99 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k++ + +s+ l +p f e+ + ++t+ l d sgrsW+v++ ++++g+++lt GW++Fvk+n+L++g + F +d +++f Bostr.7128s0269.1.p 9 FMKAF--ISQKSSKSLAIPLGFN-EYfPD--PLPITVDLLDYSGRSWTVRM-KKRGGGKVFLTLGWENFVKDNNLEDGKYLNFIYDCDRTF- 93 66777..445556669******8.66243..499*****************.3555556*************************9987776. PP .EEEEE- CS B3 92 lvvkvfr 98 +v +f Bostr.7128s0269.1.p 94 -YVIIFG 99 .888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.69E-24 | 4 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-21 | 5 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.565 | 7 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-17 | 9 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-19 | 9 | 101 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MADTSEVRFM KAFISQKSSK SLAIPLGFNE YFPDPLPITV DLLDYSGRSW TVRMKKRGGG 60 KVFLTLGWEN FVKDNNLEDG KYLNFIYDCD RTFYVIIFGH DMCSEFREFP QVVVDVDDYE 120 TCEDEEEEQK ENKSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 1e-60 | 1 | 103 | 3 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7128s0269.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493460 | 1e-123 | AB493460.1 Arabidopsis thaliana At1g16640 mRNA for hypothetical protein, partial cds, clone: RAAt1g16640. | |||
GenBank | BT012511 | 1e-123 | BT012511.1 Arabidopsis thaliana At1g16640 gene, complete cds. | |||
GenBank | BT014811 | 1e-123 | BT014811.1 Arabidopsis thaliana At1g16640 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010497982.1 | 6e-77 | PREDICTED: B3 domain-containing protein At1g16640-like | ||||
Swissprot | Q9FX77 | 3e-68 | Y1664_ARATH; B3 domain-containing protein At1g16640 | ||||
TrEMBL | D7KEH6 | 6e-68 | D7KEH6_ARALL; Transcriptional factor B3 family protein | ||||
STRING | Bostr.7128s0269.1.p | 1e-96 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15751 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16640.1 | 3e-68 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7128s0269.1.p |
Publications ? help Back to Top | |||
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