PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7128s0053.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 328aa    MW: 37276.6 Da    PI: 6.3356
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7128s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.7e-10658148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                         +++WT eE+e l+ +++++G g W+ I +        + Rt  ++k++w++ +
  Bostr.7128s0053.1.p  6 KNKWTVEEEEALLAGIAKHGYGKWANIVEDPEfapqlLDRTNINLKDKWRNMK 58
                         689**************************999999***************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.102162IPR017930Myb domain
SuperFamilySSF466897.4E-16360IPR009057Homeodomain-like
SMARTSM007172.5E-8560IPR001005SANT/Myb domain
PfamPF002494.7E-7658IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-13659IPR009057Homeodomain-like
CDDcd116607.57E-18859No hitNo description
SuperFamilySSF467855.44E-1397174IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005268.7E-1497162IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.7E-1397172IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.86999167IPR005818Linker histone H1/H5, domain H15
PfamPF005384.9E-9102165IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MQGHRKNKWT VEEEEALLAG IAKHGYGKWA NIVEDPEFAP QLLDRTNINL KDKWRNMKNR  60
VGIMEKSMTQ TLKSASVSIS PAKTSPVVVS NEPSSDKSND TRYDAMVFEA ISTINDENGS  120
DLKEILSFIE ERHEVPQNFK KLLSNSLRIL VSQDKLKKVR NSYKISITKA TKPTHILHPK  180
DSMNPPELPS TSVISTKAKE TQEIDAAANK VAERINELAE ENDVWYEERQ DFRKFLSECL  240
KILVSQGKLE KVLDRYKISE LENKVLEIAP EVVAMKIADS DKKRLIAAEA VEEEQRMHKL  300
VEESHTMLQL CLEIHQQCAL GEEVVLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7128s0053.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1764441e-133AK176444.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-21-F06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010462340.10.0PREDICTED: telomere repeat-binding factor 5-like
TrEMBLR0GQR30.0R0GQR3_9BRAS; Uncharacterized protein
STRINGBostr.7128s0053.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1668455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.26e-52MYB_related family protein