PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6864s0295.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 464aa    MW: 52045.7 Da    PI: 6.0392
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6864s0295.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.22e-50131411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp+G+rF+Ptdeel+ +yL++k++g++ ++ ++i+e+di+k+ePwdLp  + +k++++ew fF++ d+ky++g+r+nrat +gyWkatgk
  Bostr.6864s0295.1.p  13 LPVGLRFRPTDEELIRYYLRRKINGHDGDV-KAIREIDICKWEPWDLPdfSVIKTKDSEWLFFCPLDRKYPNGSRQNRATIAGYWKATGK 101
                          799************************999.88***************6448889999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++++s k++ +g+k+tLvf++grapkg++t+Wv+heyr+
  Bostr.6864s0295.1.p 102 DRKIKSDKTNIIGVKRTLVFHSGRAPKGTRTNWVIHEYRA 141
                          **************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-567164IPR003441NAC domain
PROSITE profilePS5100554.45313164IPR003441NAC domain
PfamPF023652.5E-2414140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MNQNLEVLSM DSLPVGLRFR PTDEELIRYY LRRKINGHDG DVKAIREIDI CKWEPWDLPD  60
FSVIKTKDSE WLFFCPLDRK YPNGSRQNRA TIAGYWKATG KDRKIKSDKT NIIGVKRTLV  120
FHSGRAPKGT RTNWVIHEYR AIENDLSGTN PGQSPFVICK LFKKQELNLA EEDSKSDEAE  180
PTVSSPTVEV SEVTKTEDVK RYDIVESSLV ISCDSHSDAC DEATTAELVD YDWYPQLESL  240
DCKLFSPLHS QVQCELGSSY DTFQPGSSNF SGNDTNSFQI QTQYVTNEVD TYISEFLDSI  300
LKSPDEDPEK HKYVLQGGFY GATPDQIAPA YQLDSAVDMS NDVSVTGIKI RNRRAQPSGC  360
TNDYIAQGNS PRRLRLQTNL NGINSKNPEL QVIKREAEDT VGEIIKKGCG KLMRSKNKTG  420
LVFKKIMSLK CSYGGFLRAA VVAVVFLISV CSLTVDFRAS AMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-4831657166NO APICAL MERISTEM PROTEIN
1ut4_B8e-4831657166NO APICAL MERISTEM PROTEIN
1ut7_A8e-4831657166NO APICAL MERISTEM PROTEIN
1ut7_B8e-4831657166NO APICAL MERISTEM PROTEIN
3swm_A8e-48316510169NAC domain-containing protein 19
3swm_B8e-48316510169NAC domain-containing protein 19
3swm_C8e-48316510169NAC domain-containing protein 19
3swm_D8e-48316510169NAC domain-containing protein 19
3swp_A8e-48316510169NAC domain-containing protein 19
3swp_B8e-48316510169NAC domain-containing protein 19
3swp_C8e-48316510169NAC domain-containing protein 19
3swp_D8e-48316510169NAC domain-containing protein 19
4dul_A8e-4831657166NAC domain-containing protein 19
4dul_B8e-4831657166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6864s0295.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0597340.0AY059734.1 Arabidopsis thaliana putative NAC2 protein (At3g49530) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291082.10.0NAC domain-containing protein 62
SwissprotQ9SCK60.0NAC62_ARATH; NAC domain-containing protein 62
TrEMBLR0HFW30.0R0HFW3_9BRAS; Uncharacterized protein
STRINGBostr.6864s0295.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.10.0NAC domain containing protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]