PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.6864s0293.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 376aa MW: 42080.9 Da PI: 4.9516 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.5 | 3.5e-19 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll+ +v ++G g+W+++ ++ g+ R++k+c++rw ++l Bostr.6864s0293.1.p 22 KGPWTEEEDDLLIAYVDKHGDGNWNAVQKHSGLSRCGKSCRLRWVNHL 69 79*******************************************996 PP | |||||||
2 | Myb_DNA-binding | 46.7 | 7.2e-15 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+ E+++ ++++++lG++ W++ a +++ gRt++++k++w++ Bostr.6864s0293.1.p 75 KGAFTEKEEKRVIELHALLGNK-WARMAGELP-GRTDNEIKNFWNT 118 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.006 | 17 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-29 | 21 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-16 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-18 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.37E-13 | 24 | 69 | No hit | No description |
SMART | SM00717 | 7.9E-14 | 74 | 122 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.109 | 74 | 124 | IPR017930 | Myb domain |
Pfam | PF00249 | 9.2E-14 | 75 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.77E-10 | 77 | 120 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 77 | 122 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 376 aa Download sequence Send to blast |
MGKVCNASGS DDDTAIEKTF IKGPWTEEED DLLIAYVDKH GDGNWNAVQK HSGLSRCGKS 60 CRLRWVNHLR PDLKKGAFTE KEEKRVIELH ALLGNKWARM AGELPGRTDN EIKNFWNTRL 120 KRLQRLGLPV YPDEVREQVM NAATQSGLNT DSLDAHHSQD SLEADCVEIP EFNFAQSSFN 180 QCSSYYQSML HKGRQRPCFV QPNMYNMIAS PYMSTRKRSR ESETAFPCTG GYAMNEQNPP 240 LWNYPFVNNI PGLLLPDSHL LGNATYSSPP GPLIHEVQKL ELPSFQYDNS PGSLGAQQSN 300 PMSEHEPENT LVQSPLTTDH EPSDCPPSSL YDGLLESIVY GSSVEKLATD TDLESPLFQS 360 FLLGHTELTP ATENTT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-32 | 20 | 122 | 5 | 106 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00279 | DAP | Transfer from AT2G26960 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.6864s0293.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002880852.2 | 0.0 | transcription factor MYB104 | ||||
Swissprot | Q9SM27 | 1e-120 | MY104_ARATH; Transcription factor MYB104 | ||||
TrEMBL | D7LFF1 | 0.0 | D7LFF1_ARALL; Predicted protein | ||||
STRING | Bostr.6864s0293.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9198 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26960.1 | 0.0 | myb domain protein 81 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.6864s0293.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|