PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6864s0256.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 303aa    MW: 33038.6 Da    PI: 9.924
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6864s0256.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.9e-13555146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                         +++WT+eE+  l+ +v ++G+g W+tI +        k R+  ++k++w++
  Bostr.6864s0256.1.p  5 KQKWTPEEETALKAGVLKHGTGKWRTILSDPEyssilKSRSNVDLKDKWRN 55
                         79***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.116161IPR017930Myb domain
SuperFamilySSF466891.5E-15259IPR009057Homeodomain-like
SMARTSM007177.2E-7459IPR001005SANT/Myb domain
PfamPF002499.9E-9555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-14556IPR009057Homeodomain-like
CDDcd116602.70E-18656No hitNo description
SMARTSM005262.3E-11122189IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.2E-11126203IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150416.837126194IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.5E-7128195IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGAPKQKWTP EEETALKAGV LKHGTGKWRT ILSDPEYSSI LKSRSNVDLK DKWRNISVTA  60
LWGSRKKAKL ALKKTPSSGP RQDDNAAAIS IVSLANGHNG NAGGQEIDAP SPPAGSCEPP  120
RSFKGPFTSV DNTILEAITN LKRPFGPDGK SILLYIEENF KMQPDMKRLV TSRLKYLTNV  180
GTLVKIKHKY RISPNYMDEG ARQRSPLLFL EGNKENTPKP EENGIKNLTK SQVDGEVIIK  240
GMTEKEAAAA AARAVAEAEF AIAEAEEAAR EADEAEAEAE AAHIFAKAAM KALKYRMHSQ  300
TR*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6864s0256.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0588870.0AY058887.1 Arabidopsis thaliana AT3g49850/T16K5_200 mRNA, complete cds.
GenBankAY0650690.0AY065069.1 Arabidopsis thaliana AT3g49850/T16K5_200 mRNA, complete cds.
GenBankAY0790430.0AY079043.1 Arabidopsis thaliana AT3g49850/T16K5_200 mRNA, complete cds.
GenBankAY5195420.0AY519542.1 Arabidopsis thaliana MYB transcription factor (At3g49850) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291568.11e-180telomere repeat-binding factor 3
SwissprotQ9M2X31e-161TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBLR0FQN81e-179R0FQN8_9BRAS; Uncharacterized protein
STRINGBostr.6864s0256.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38092759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.11e-152telomere repeat binding factor 3
Publications ? help Back to Top
  1. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]