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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Bostr.6864s0245.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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| Family |
GRAS |
| Protein Properties |
Length: 411aa MW: 46261.9 Da PI: 6.2538 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.6864s0245.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 336.8 | 3.8e-103 | 28 | 407 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
++lLl+cA+a++s+d++la+++L+ l+++a pdgd++qRl++ f++AL +r ++++++l+++l+ ++ +++ + ++ l +f++++P++
Bostr.6864s0245.1.p 28 EQLLLHCATAIESNDAALAHRILWVLNNTAPPDGDSTQRLTSAFLRALLSRAVSKTPTLSSTLSFQPPADECHRFSVLELAAFVDLTPWH 117
79******************************************************************98777777777777******** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
+f++++aN aIl aveg ++vHi+D+++++++Q p+L++a+asR ++pp l++T+v+s++ + ++ee+g++L +fA++ ++++ef
Bostr.6864s0245.1.p 118 RFGFIAANAAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMASRLnKPPPLLKLTVVSSSSVPpfINISYEELGSKLVNFATTRNITMEF 207
********************************************966777*********6654889************************ PP
GRAS 179 nvl...vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
+++ +++ +++l +++Lr+ p +Eal+ n++++l ++++e+++++s r+ +Lk+++sl+P++v+++e+++d++se++++r+ +
Bostr.6864s0245.1.p 208 TFIpstYSDGFSAL-INQLRIYPssfNEALVFNCHMMLRYIPEETLTSSSsssLRTVFLKQLRSLNPRIVTLIEEDVDLTSENLVNRLRS 296
**988666677777.*****************************998877677899********************************** PP
GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348
a++y++ fd++++ +se+r+++E+e ++++i+nvva+egaer+er+et+++W er++ea F+ v+++e+a++++k++l++++ ++g
Bostr.6864s0245.1.p 297 AFNYFWIPFDTTNTF---TSEQRRWYEAE-ISWKIENVVAKEGAERVERTETKRQWFERMREAEFGGVRVKEEAVADVKAMLEEHAvGWG 382
************999...8**********.************************************************************ PP
GRAS 349 yrveeesgslvlgWkdrpLvsvSaW 373
++ +++++slv++Wk++++v++++W
Bostr.6864s0245.1.p 383 MKKDDDDESLVMTWKGHSVVFATVW 407
************************* PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 411 aa
Download sequence Send
to blast |
MTKTRILNPT RFPSPKPLRG GGDANFMEQL LLHCATAIES NDAALAHRIL WVLNNTAPPD 60
GDSTQRLTSA FLRALLSRAV SKTPTLSSTL SFQPPADECH RFSVLELAAF VDLTPWHRFG 120
FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSSVP 180
PFINISYEEL GSKLVNFATT RNITMEFTFI PSTYSDGFSA LINQLRIYPS SFNEALVFNC 240
HMMLRYIPEE TLTSSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLRSAFNY 300
FWIPFDTTNT FTSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRQWFE RMREAEFGGV 360
RVKEEAVADV KAMLEEHAVG WGMKKDDDDE SLVMTWKGHS VVFATVWVPI *
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK226623 | 0.0 | AK226623.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-29-K13. |
| GenBank | AL132978 | 0.0 | AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4. |
| GenBank | BT012553 | 0.0 | BT012553.1 Arabidopsis thaliana At3g49950 gene, complete cds. |
| GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
