PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.6758s0078.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 301aa    MW: 34645.9 Da    PI: 5.6603
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.6758s0078.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.61.6e-5561331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeelv +yL +kv+g+ +el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgk
  Bostr.6758s0078.1.p   6 LPPGFRFHPTDEELVAYYLDRKVNGRAIEL-EIIPEVDLYKCEPWDLPeKsFLPGNDMEWYFYSTRDKKYPNGSRTNRATRAGYWKATGK 94 
                          79****************************.99**************95334455788******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v s k+ ++g+kktLv+y+grap+g +t+Wvmheyrl
  Bostr.6758s0078.1.p  95 DRTVES-KKMKMGMKKTLVYYRGRAPHGLRTNWVMHEYRL 133
                          *****9.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-633153IPR003441NAC domain
PROSITE profilePS5100559.4956153IPR003441NAC domain
PfamPF023654.3E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKVNG RAIELEIIPE VDLYKCEPWD LPEKSFLPGN  60
DMEWYFYSTR DKKYPNGSRT NRATRAGYWK ATGKDRTVES KKMKMGMKKT LVYYRGRAPH  120
GLRTNWVMHE YRLTHAPCSS LKESYALCRV FKKNIQIPKR KGEEEEAEEE SSSVGKDEEE  180
EKEKKWRKCD GNIEDESLKR ASAETSSSEL TQGILLDEAN SSSIFALHFS SSLLDDHDHL  240
FSNYPHQIPY HPPLQLQDFP QLSMNEAEIM SIQQDFQCRD SMNGTLDEIF SSSATFPASL  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-55115412166NO APICAL MERISTEM PROTEIN
1ut4_B8e-55115412166NO APICAL MERISTEM PROTEIN
1ut7_A8e-55115412166NO APICAL MERISTEM PROTEIN
1ut7_B8e-55115412166NO APICAL MERISTEM PROTEIN
3swm_A9e-55115415169NAC domain-containing protein 19
3swm_B9e-55115415169NAC domain-containing protein 19
3swm_C9e-55115415169NAC domain-containing protein 19
3swm_D9e-55115415169NAC domain-containing protein 19
3swp_A9e-55115415169NAC domain-containing protein 19
3swp_B9e-55115415169NAC domain-containing protein 19
3swp_C9e-55115415169NAC domain-containing protein 19
3swp_D9e-55115415169NAC domain-containing protein 19
4dul_A8e-55115412166NAC domain-containing protein 19
4dul_B8e-55115412166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.6758s0078.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1762780.0AK176278.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-20-J17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175835.20.0NAC domain containing protein 20
SwissprotQ9FFI53e-82NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A178WA620.0A0A178WA62_ARATH; NAC020
TrEMBLQ67Z400.0Q67Z40_ARATH; NAC domain containing protein 20
STRINGBostr.6758s0078.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81232640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.10.0NAC domain containing protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]