PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.6758s0074.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NF-YC | ||||||||
Protein Properties | Length: 190aa MW: 21910.8 Da PI: 6.0246 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.7 | 5.3e-56 | 44 | 148 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlr+w+h+eenkrrtl+k+diaaa++rtd Bostr.6758s0074.1.p 44 QLQMFWANQmqeIEQTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTD 133 89******988889**************************************************************************** PP NF-YC 88 ifdflvdivprdelk 102 +fdflvdi+prdelk Bostr.6758s0074.1.p 134 VFDFLVDIIPRDELK 148 ************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.58E-35 | 35 | 138 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.2E-22 | 66 | 129 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.4E-38 | 67 | 144 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MEQSEEGQQQ QGVMDFVPPH AFQSGPASHM AFQQAHHFHH HHQQLQMFWA NQMQEIEQTT 60 DFKNHTLPLA RIKKIMKADE DVRMISAEAP VIFAKACEMF ILELTLRAWI HTEENKRRTL 120 QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMPHW 180 PQEQHHDES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-57 | 51 | 144 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 122 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.6758s0074.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC009894 | 0.0 | AC009894.2 Arabidopsis thaliana chromosome I BAC T6H22 genomic sequence, complete sequence. | |||
GenBank | AC069159 | 0.0 | AC069159.8 Arabidopsis thaliana chromosome 1 BAC F14G9 genomic sequence, complete sequence. | |||
GenBank | AY072411 | 0.0 | AY072411.1 Arabidopsis thaliana transcription factor, putative (At1g56170) mRNA, complete cds. | |||
GenBank | AY114704 | 0.0 | AY114704.1 Arabidopsis thaliana putative transcription factor (At1g56170) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006306507.1 | 1e-122 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_023644735.1 | 1e-122 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_023644736.1 | 1e-122 | nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q8LCG7 | 1e-110 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | R0ILF8 | 1e-121 | R0ILF8_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.6758s0074.1.p | 1e-140 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-107 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.6758s0074.1.p |
Publications ? help Back to Top | |||
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