PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.6758s0055.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 28410.9 Da PI: 7.9858 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.5 | 5.9e-32 | 5 | 78 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + k+wyf+s+rd+kyatg r+nrat++gyWkatgkd+++ + kg+lvg++ktLvfy+grap+g+ktdWvmhe+r+ Bostr.6758s0055.1.p 5 GGKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRAIQR-KGKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRI 78 5689***********************************99.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 40.23 | 1 | 104 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.32E-38 | 3 | 105 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-15 | 8 | 78 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MACVGGKDWY FYSQRDRKYA TGLRTNRATA TGYWKATGKD RAIQRKGKLV GMRKTLVFYQ 60 GRAPRGRKTD WVMHEFRIQG SYQPPDHSLS SPKEDWVLCR VFHKNTEGVI CRDNTGSCFD 120 ETASASLPPL MDPYINFDQE PSSYLSDDQH FIINEHVPCF SNLSQNQTLN LTNSVSELKP 180 PCKNPNPLFT GASTPATLTG LDSFCSSDQM VLRALLSQLT KIDGGLGTKE SQNYGEGSSE 240 SLLTDIGIPS TAWNC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 7e-33 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swm_B | 7e-33 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swm_C | 7e-33 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swm_D | 7e-33 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swp_A | 7e-33 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swp_B | 7e-33 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swp_C | 7e-33 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swp_D | 7e-33 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.6758s0055.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF198054 | 0.0 | AF198054.1 Arabidopsis thaliana NAC1 (NAC1) mRNA, complete cds. | |||
GenBank | AK228347 | 0.0 | AK228347.1 Arabidopsis thaliana mRNA for NAC1, complete cds, clone: RAFL14-76-M12. | |||
GenBank | AY085996 | 0.0 | AY085996.1 Arabidopsis thaliana clone 205648 mRNA, complete sequence. | |||
GenBank | BT005873 | 0.0 | BT005873.1 Arabidopsis thaliana At1g56010 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010501232.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-179 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | R0GNI1 | 1e-180 | R0GNI1_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.6758s0055.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.1 | 1e-170 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.6758s0055.1.p |