PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5325s0023.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 355aa    MW: 39893.2 Da    PI: 6.3176
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5325s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.63.9e-3155154195
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++    ++++++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  
  Bostr.5325s0023.1.p  55 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGi 144
                          89***************************966677889*************************************************654 PP

                          SSSEE..EEE CS
                   B3  86 grsefelvvk 95 
                          g++++++++ 
  Bostr.5325s0023.1.p 145 GDESERPKLY 154
                          7777666654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.1E-4248161IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-3051143IPR015300DNA-binding pseudobarrel domain
CDDcd100173.21E-2753155No hitNo description
PfamPF023621.8E-2855154IPR003340B3 DNA binding domain
PROSITE profilePS5086314.62155159IPR003340B3 DNA binding domain
SMARTSM010195.4E-2255161IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGTGNNNN LPMMMIPPPE KEHMFDKVVT  60
PSDVGKLNRL VIPKQHAERY FPLDSSNNQN GTLLNFQDRN GKMWRFRYSY WNSSQSYVMT  120
KGWSRFVKEK KLDAGDIVSF QRGIGDESER PKLYIDWRHR PDMSLVQAHQ FGNFGFNFNF  180
PTTSQYSNRF HPLPEYNSVP IHRSLNIGNH QRSYYNNQRQ EFVGYGYGNL AGRCYYTGSP  240
LDQRNIVGSE PLVIESVPVV PGRLTPVMLP PLPPPPSTAG KRLRLFGVNM ECGNDYNQQE  300
ESWVVPRGEM GASSSSSALR LNLSTDHDDD DGDGGDDDQF AKKGKSSISL DFNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-62491632116B3 domain-containing transcription factor NGA1
5os9_B2e-62491632116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5325s0023.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0073230.0AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence.
GenBankAF1965660.0AF196566.1 Arabidopsis thaliana chromosome I, partial sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankFJ8737330.0FJ873733.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA3 (NGA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418368.10.0B3 domain-containing transcription factor NGA3
SwissprotQ9MAN10.0NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLV4MWI90.0V4MWI9_EUTSA; Uncharacterized protein
STRINGBostr.5325s0023.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139901724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.10.0B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]