PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.5325s0018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 235aa MW: 26236.5 Da PI: 8.4769 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 90.5 | 2.9e-28 | 5 | 134 | 6 | 127 |
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 F+P +eel++++L++k+++++ + + i+ev+i+ +eP dLp +k e++ wyf s+ +k + +r++ra ++g Wk tg+++++++ Bostr.5325s0018.1.p 5 TFNPPEEELITYFLNNKITENDDLVGRQITEVNICLHEPADLPGLAKIESShTWYFISPVEK-FGRLNRTKRASRTGHWKITGNSRTIKD 93 7*********************888788***************6444444426777777665.56789********************** PP NAM 95 kkgelvglkktLvfy........kgrapkgektdWvmheyr 127 +g+ +glkk Lvf + +++k k++W++he++ Bostr.5325s0018.1.p 94 VDGNPIGLKKFLVFQenkisstpSSTTSKQYKSKWIIHEFH 134 ***************6666555446667777*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 33.514 | 1 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-17 | 4 | 134 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.37E-33 | 4 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSRYTFNPPE EELITYFLNN KITENDDLVG RQITEVNICL HEPADLPGLA KIESSHTWYF 60 ISPVEKFGRL NRTKRASRTG HWKITGNSRT IKDVDGNPIG LKKFLVFQEN KISSTPSSTT 120 SKQYKSKWII HEFHSFLHHP NKDAFVLCKL KKTRRSSTVS EASPAAKDVS HILTSAPILN 180 HSQSLEQGES SGLLLGENGH VYGGQNTAEN SNDLGLGEYV VAHKLCFQAN NDQI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-14 | 4 | 157 | 24 | 172 | NAC domain-containing protein 19 |
3swm_B | 3e-14 | 4 | 157 | 24 | 172 | NAC domain-containing protein 19 |
3swm_C | 3e-14 | 4 | 157 | 24 | 172 | NAC domain-containing protein 19 |
3swm_D | 3e-14 | 4 | 157 | 24 | 172 | NAC domain-containing protein 19 |
3swp_A | 3e-14 | 4 | 157 | 24 | 172 | NAC domain-containing protein 19 |
3swp_B | 3e-14 | 4 | 157 | 24 | 172 | NAC domain-containing protein 19 |
3swp_C | 3e-14 | 4 | 157 | 24 | 172 | NAC domain-containing protein 19 |
3swp_D | 3e-14 | 4 | 157 | 24 | 172 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.5325s0018.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC022287 | 4e-85 | AC022287.9 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 4e-85 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018511050.1 | 1e-103 | PREDICTED: NAC domain-containing protein 62 isoform X1 | ||||
TrEMBL | R0GLB4 | 1e-106 | R0GLB4_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.5325s0018.1.p | 1e-175 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14815 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04430.1 | 2e-78 | NAC domain containing protein 49 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.5325s0018.1.p |