PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.5325s0017.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

NAC

Protein Properties

Length: 217aa MW: 25472 Da PI: 7.8161

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.5325s0017.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.1	3.6e-36	4	134	2	128
NAM 2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 p G+rF Ptdee+ ++yL+ + +e+++ +++evi++v i++++Pw+Lp+ vk+++ wyfF + +kky++g+r+nr+tksgyWk+t Bostr.5325s0017.1.p 4 PIGVRFCPTDEEIFDYYLRVRnLETNTSHVDEVISTVSICSSDPWHLPSmattIVKTTDLVWYFFGRIEKKYNRGDRQNRKTKSGYWKKT 93 79**************977266666888899***********5355444556669************************* PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g + +++++ ++e+ g k+ L+fy + g k++W mhey++ Bostr.5325s0017.1.p 94 GVTVDIKREsgNREKLGEKRFLTFY---FEGGFKSKWNMHEYHA 134 ***99888888******...678899******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.411	3	155	IPR003441	NAC domain
SuperFamily	SSF101941	2.75E-40	3	155	IPR003441	NAC domain
Pfam	PF02365	3.7E-20	4	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MVNPIGVRFC PTDEEIFDYY LRVRNLETNT SHVDEVISTV SICSSDPWHL PSMATTIVKT 60 TDLVWYFFGR IEKKYNRGDR QNRKTKSGYW KKTGVTVDIK RESGNREKLG EKRFLTFYFE 120 GGFKSKWNMH EYHATFLSPN QMMMMTYTLC KVEFKDDISC YVLENPCQIT ESPDLDALDW 180 VMCNILNPDF VGLADDDEVQ ESRSLTIKKH QRKRRR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-17	4	152	18	162	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-17	4	152	18	162	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-17	4	152	18	162	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-17	4	152	18	162	NO APICAL MERISTEM PROTEIN
3swm_A	1e-17	4	152	21	165	NAC domain-containing protein 19
3swm_B	1e-17	4	152	21	165	NAC domain-containing protein 19
3swm_C	1e-17	4	152	21	165	NAC domain-containing protein 19
3swm_D	1e-17	4	152	21	165	NAC domain-containing protein 19
3swp_A	1e-17	4	152	21	165	NAC domain-containing protein 19
3swp_B	1e-17	4	152	21	165	NAC domain-containing protein 19
3swp_C	1e-17	4	152	21	165	NAC domain-containing protein 19
3swp_D	1e-17	4	152	21	165	NAC domain-containing protein 19
4dul_A	1e-17	4	152	18	162	NAC domain-containing protein 19
4dul_B	1e-17	4	152	18	162	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	215	RKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.5325s0017.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010480819.1	1e-111	PREDICTED: NAC domain-containing protein 5-like isoform X1
Swissprot	O81914	2e-77	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	R0I7D2	2e-86	R0I7D2_9BRAS; Uncharacterized protein
STRING	Bostr.5325s0017.1.p	1e-163	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	9e-80	NAC domain containing protein 5

Link Out ? help Back to Top
Phytozome	Bostr.5325s0017.1.p

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]