PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.5325s0016.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

NAC

Protein Properties

Length: 351aa MW: 40014.7 Da PI: 8.6786

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.5325s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.2	8.7e-42	4	132	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 p+GfrF+Ptdee+v+ yL++k +++ ++evi++vdi++++Pw+Lp + k+k++++ wyfF ++++ky +g+r+ r+t+sg+Wk+tg Bostr.5325s0016.1.p 4 PVGFRFRPTDEEIVDIYLRPKNLQSNtSYVDEVINTVDICSFDPWNLPsQsKMKTKDQVWYFFGRKENKYGRGDRQIRKTESGFWKKTGP 93 89****************9777762556678**********96258899999**************************** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++k ++e++g k++Lvf + +g+ktdWv+hey++ Bostr.5325s0016.1.p 94 TMDIMRKsgDREKIGEKRVLVFK---KGDGSKTDWVIHEYHA 132 **9888889*****8...567788******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	45.433	3	150	IPR003441	NAC domain
SuperFamily	SSF101941	1.31E-45	3	150	IPR003441	NAC domain
Pfam	PF02365	2.2E-22	4	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MANPVGFRFR PTDEEIVDIY LRPKNLQSNT SYVDEVINTV DICSFDPWNL PSQSKMKTKD 60 QVWYFFGRKE NKYGRGDRQI RKTESGFWKK TGPTMDIMRK SGDREKIGEK RVLVFKKGDG 120 SKTDWVIHEY HATSPNQMMM TYTLCKVKFK GERRELSVAS SSGIEHTGSL IPHTNNSGGF 180 SVETEGSSFH RQESQNPSQF TGFLDVDALD CFNDFKSFFD DDEQSKIVSM HNDRNNHRPQ 240 KALTGVFTDH STDDSDSDPI YATTISIQTS STCDSFGSSN HRIDQIKTQQ SPDSTTQLVS 300 STQEHSQHFG LKLGQEVIKD KRAGFFYRMI QKFVKKVRLC SSISKHDVKK *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MANPVGFRFR PTDEEIVDIY LRPKNLQSNT SYVDEVINTV DICSFDPWNL PSQSKMKTKD  60
QVWYFFGRKE NKYGRGDRQI RKTESGFWKK TGPTMDIMRK SGDREKIGEK RVLVFKKGDG  120
SKTDWVIHEY HATSPNQMMM TYTLCKVKFK GERRELSVAS SSGIEHTGSL IPHTNNSGGF  180
SVETEGSSFH RQESQNPSQF TGFLDVDALD CFNDFKSFFD DDEQSKIVSM HNDRNNHRPQ  240
KALTGVFTDH STDDSDSDPI YATTISIQTS STCDSFGSSN HRIDQIKTQQ SPDSTTQLVS  300
STQEHSQHFG LKLGQEVIKD KRAGFFYRMI QKFVKKVRLC SSISKHDVKK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-24	1	147	15	162	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-24	1	147	15	162	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-24	1	147	15	162	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-24	1	147	15	162	NO APICAL MERISTEM PROTEIN
3swm_A	1e-23	1	147	18	165	NAC domain-containing protein 19
3swm_B	1e-23	1	147	18	165	NAC domain-containing protein 19
3swm_C	1e-23	1	147	18	165	NAC domain-containing protein 19
3swm_D	1e-23	1	147	18	165	NAC domain-containing protein 19
3swp_A	1e-23	1	147	18	165	NAC domain-containing protein 19
3swp_B	1e-23	1	147	18	165	NAC domain-containing protein 19
3swp_C	1e-23	1	147	18	165	NAC domain-containing protein 19
3swp_D	1e-23	1	147	18	165	NAC domain-containing protein 19
4dul_A	9e-24	1	147	15	162	NAC domain-containing protein 19
4dul_B	9e-24	1	147	15	162	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00123	DAP	Transfer from AT1G02250	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.5325s0016.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493425	0.0	AB493425.1 Arabidopsis thaliana At1g02250 mRNA for hypothetical protein, partial cds, clone: RAAt1g02250.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_171727.2	0.0	NAC domain containing protein 5
Swissprot	O81914	0.0	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	A0A178W508	0.0	A0A178W508_ARATH; NAC005
STRING	Bostr.5325s0016.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	1e-179	NAC domain containing protein 5

Link Out ? help Back to Top
Phytozome	Bostr.5325s0016.1.p

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]