PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.5325s0014.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 171aa MW: 19500.8 Da PI: 9.5565 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 70.5 | 4.4e-22 | 5 | 124 | 6 | 127 |
NAM 6 rFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 F+P +eel+++yL++k++g++ l +++i+ev+i+ +eP +Lp +k e++ wyf s+ +k + +r++ra ++g Wk tg++ Bostr.5325s0014.1.p 5 TFNPPEEELITYYLNNKITGNDdLVGNRHITEVNICLHEPAELPGLAKIESShTWYFISPVEK-FGRLNRTKRASRTGHWKITGNS---- 89 7*******************995445567***************6444444426777777665.56789***************93.... PP NAM 94 skkgelvglkktLvfy........kgrapkgektdWvmheyr 127 lkk Lvf + +a++ k++W++he++ Bostr.5325s0014.1.p 90 -------CLKKFLVFQenkrsstsSSTASQQYKSKWIIHEFH 124 .......2344444442222222146677778*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.135 | 1 | 140 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-15 | 4 | 124 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.31E-25 | 4 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MSRYTFNPPE EELITYYLNN KITGNDDLVG NRHITEVNIC LHEPAELPGL AKIESSHTWY 60 FISPVEKFGR LNRTKRASRT GHWKITGNSC LKKFLVFQEN KRSSTSSSTA SQQYKSKWII 120 HEFHSFLHHP NKSLKQGESR GLLLGENGHV YGGQNTTENS NVGQYFKDNI * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.5325s0014.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC022287 | 2e-45 | AC022287.9 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 2e-45 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002889393.1 | 6e-78 | NAC domain-containing protein 69 | ||||
TrEMBL | D7KB61 | 1e-76 | D7KB61_ARALL; Predicted protein | ||||
STRING | Bostr.5325s0014.1.p | 1e-124 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14815 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04430.1 | 8e-71 | NAC domain containing protein 49 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.5325s0014.1.p |