PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5325s0011.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 349aa    MW: 39865.8 Da    PI: 6.7303
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5325s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.73.4e-34351634127
                  NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          G+ F+Ptd+elv +yL++k++g++  +e +i+ev+i++++Pw+L   +k+k++++ wyfFs+r++ky tg+r+nr+t sg Wk tg  + 
  Bostr.5325s0011.1.p  35 GVWFRPTDDELVGFYLHNKIQGNTWLVEGAINEVNICDFDPWNLCcqSKIKSKDRVWYFFSRRKNKYGTGDRQNRKTPSGKWKLTGVPTV 124
                          899*********************999899**************64359999999*********************************** PP

                  NAM  92 vlsk.....kgelvglkktLvfykgrapkgektdWvmheyr 127
                          v+++      + ++g k+ L f   ++ +g   +Wv+hey+
  Bostr.5325s0011.1.p 125 VMDHlgrcgIRGKIGHKRCLEFV--NSVTGLDDKWVIHEYH 163
                          ***9877764556*********9..899999*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.44132184IPR003441NAC domain
SuperFamilySSF1019417.98E-3632184IPR003441NAC domain
PfamPF023652.5E-1835163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVKDTAHNSP FKKVSFTNQD EDLHLREYGN GGFGGVWFRP TDDELVGFYL HNKIQGNTWL  60
VEGAINEVNI CDFDPWNLCC QSKIKSKDRV WYFFSRRKNK YGTGDRQNRK TPSGKWKLTG  120
VPTVVMDHLG RCGIRGKIGH KRCLEFVNSV TGLDDKWVIH EYHNTVVLPE HLRTTYVICR  180
LEYKGDDMSI LSANMTNSEG SVVNQSQYDN TYSEDDSTNH GQHLNGYDGG RLRIWDYEVD  240
FNTDQFLHEL LPDERTSMQE NCNVCIPKKP VTGYLTDGSS NSDTDSMFGS DNSSGTDSVG  300
EAPSTKTVKQ KWIVLEKISQ RNSQWIYLKN MIIGFLLFIS VIRWIILV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-163516318139Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5325s0011.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0073237e-35AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence.
GenBankAF1965667e-35AF196566.1 Arabidopsis thaliana chromosome I, partial sequence.
GenBankCP0026847e-35CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474684.11e-117PREDICTED: NAC domain-containing protein 1-like
SwissprotQ0WV961e-82NAC1_ARATH; NAC domain-containing protein 1
TrEMBLA0A087HK393e-81A0A087HK39_ARAAL; Uncharacterized protein
STRINGBostr.5325s0011.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.15e-85NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]