PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.5325s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 362aa MW: 41269.8 Da PI: 4.6945 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 91.1 | 2e-28 | 5 | 128 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +G+ F+ t+ elv +yL +k++gk+ +e +i+ev+i++++Pw+L+ + wyfFs+r++ky tg+r+nr+t sg Wk tg + v Bostr.5325s0010.1.p 5 VGLGFRTTEVELVGYYLPNKIQGKTWLVEGAINEVNICDFDPWNLR------YRVWYFFSRRKNKYGTGDRRNRKTPSGKWKLTGVPTVV 88 6999*********************999899**************6......468*********************************** PP NAM 93 lsk......kgelvglkktLvfykgrapkgektdWvmheyr 127 ++ + ++g k+ L f + + +Wv+hey+ Bostr.5325s0010.1.p 89 MDDlgiwcgIRGKIGHKRCLEFVNS-VTDRIDDEWVIHEYH 128 *998888775567**********55.555589********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 31.858 | 3 | 149 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.94E-30 | 5 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-15 | 5 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MEDYVGLGFR TTEVELVGYY LPNKIQGKTW LVEGAINEVN ICDFDPWNLR YRVWYFFSRR 60 KNKYGTGDRR NRKTPSGKWK LTGVPTVVMD DLGIWCGIRG KIGHKRCLEF VNSVTDRIDD 120 EWVIHEYHNT VVLPEYLRTT YVICRLEYKG DDMSILSAYA IDPTLSFVAN MTNSEGSVVN 180 QSRQGNSGSY NTYSDSSDMQ QSVSAYAIDP TLSFVANMTN SEGSVVNQSR DYNTYSEDDS 240 TNHGQHLNGY FNMLDKVPFS YDYYEVDPYT GQYLLIEWAF MQENRNVCIP KKPVTGHLTD 300 DSSNSDTDSM FVSDNSSGTD GVGNLIEPYH TPIDDIPSLY TIKPLHNFEE QEQPKLHLQG 360 K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-13 | 6 | 128 | 18 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.5325s0010.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002892089.1 | 1e-106 | NAC domain-containing protein 1 | ||||
Swissprot | Q0WV96 | 2e-96 | NAC1_ARATH; NAC domain-containing protein 1 | ||||
TrEMBL | D7KQC4 | 1e-105 | D7KQC4_ARALL; ANAC001 | ||||
STRING | Bostr.5325s0010.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7658 | 16 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01010.1 | 8e-93 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.5325s0010.1.p |
Publications ? help Back to Top | |||
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