PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5325s0009.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 424aa    MW: 48863.3 Da    PI: 5.2096
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5325s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.61e-3951383128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          +Gf F+P+deelv ++L++k+eg++ +++e i+ev i++++Pw+L+ + k+k+++  wyfFs+r++ky +g+r++r+tksg Wk tg+  
  Bostr.5325s0009.1.p   5 VGFGFRPNDEELVGHFLRNKIEGNTSHVQEYISEVTICSYDPWELRfQsKYKSRDPMWYFFSRRENKYGNGNRQSRTTKSGKWKLTGEPA 94 
                          6***************************999**************85247777888********************************** PP

                  NAM  91 evlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v+++       + ++g k++Lvf +gr p+ +k+dWv+he++ 
  Bostr.5325s0009.1.p  95 NVTDQwgfcssVRGKIGYKRVLVFLDGRYPDKTKSDWVIHEFHY 138
                          ****99998775667***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.213156IPR003441NAC domain
SuperFamilySSF1019412.09E-405156IPR003441NAC domain
PfamPF023658.6E-205137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MGDDVGFGFR PNDEELVGHF LRNKIEGNTS HVQEYISEVT ICSYDPWELR FQSKYKSRDP  60
MWYFFSRREN KYGNGNRQSR TTKSGKWKLT GEPANVTDQW GFCSSVRGKI GYKRVLVFLD  120
GRYPDKTKSD WVIHEFHYDL LPEHKRTHVI CRLEYKGDDP DILSAYAIDP TPASVANMTN  180
SEGSVVNQSC QGNSGSYNTY SSDMQQSVQE NSGYLNHFPD YDLANHDQWL IDYSNLQQQV  240
PYLAPYENES EIWKPLIEEN FESLVDERTY MQEHYSEYRP KKPVSGVLAD DSSDTETGSM  300
IFGDTSSSTD SVSSSNDSYH TIDDIPSLNT VENLHNYEAQ EQPKQLKLQC QSKEKVINMH  360
KSECDWKMAE DSIKKPPSTN IVKQSWIVLE KRSQRNTRWN YLKNMIIGVL LFISIIGWII  420
LVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-22613718139Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5325s0009.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010457186.10.0PREDICTED: NAC domain-containing protein 1-like
SwissprotQ0WV960.0NAC1_ARATH; NAC domain-containing protein 1
TrEMBLA0A178WAE40.0A0A178WAE4_ARATH; NAC001
STRINGBostr.5325s0009.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.10.0NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]