PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.5325s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 141aa MW: 16504.8 Da PI: 8.971 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 66.3 | 9.1e-21 | 5 | 125 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 + f F+Pt+ ++++yL+ k + + +++++i++v+i+ ++ + ++ wyf+s+ + ++ +t+sgyWk+tg++++ Bostr.5325s0007.1.p 5 ADFIFQPTNGVIIDYYLRLKHLDIEeGNVNHFIATVKICIKSKSKWN-----DNMVWYFYSRDEYNED-----IGKTSSGYWKETGSKTR 84 5588**************88655542677677*******99888886.....56799**999876543.....336899*********** PP NAM 92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ k +g ++g k+ Lvf + ++p+g+k+dWvmh y+l Bostr.5325s0007.1.p 85 IIGKwkrtNGVKIGEKRALVFQSCENPNGSKSDWVMHVYQL 125 **9988888889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.566 | 3 | 140 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.54E-23 | 3 | 138 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-15 | 5 | 125 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MEYPADFIFQ PTNGVIIDYY LRLKHLDIEE GNVNHFIATV KICIKSKSKW NDNMVWYFYS 60 RDEYNEDIGK TSSGYWKETG SKTRIIGKWK RTNGVKIGEK RALVFQSCEN PNGSKSDWVM 120 HVYQLTFLSP DQVIFRIYNV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.5325s0007.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020866671.1 | 2e-46 | NAC domain-containing protein 4 | ||||
TrEMBL | D7KB62 | 5e-64 | D7KB62_ARALL; Uncharacterized protein | ||||
STRING | Bostr.5325s0007.1.p | 1e-101 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19906 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02210.1 | 2e-44 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.5325s0007.1.p |