PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.5325s0006.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 28186.2 Da PI: 6.9566 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 129.6 | 2.3e-40 | 4 | 132 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 p+G+rF+Pt+ e+ + yL++k +++ +++evi++vdi++++Pw+Lp + ++k +++ wyfF ++++ky +g+++nr+t+sg+Wk+tg Bostr.5325s0006.2.p 4 PVGLRFRPTNVEIFDIYLRPKNLQSNtSHVDEVITTVDICSFDPWNLPsQsRMKIKDRVWYFFGRKENKYGRGDQQNRKTESGFWKKTGP 93 89*****************99665553788889**************9635888899********************************* PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++k ++e++g kk+L+f +++g+ktdWvmhey++ Bostr.5325s0006.2.p 94 TMDIMRKsgNREKIGEKKVLTFK---NRDGSKTDWVMHEYHA 132 ******9888889*********7...78899*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-43 | 3 | 150 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.012 | 3 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-21 | 4 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MANPVGLRFR PTNVEIFDIY LRPKNLQSNT SHVDEVITTV DICSFDPWNL PSQSRMKIKD 60 RVWYFFGRKE NKYGRGDQQN RKTESGFWKK TGPTMDIMRK SGNREKIGEK KVLTFKNRDG 120 SKTDWVMHEY HATSPNQMMM TYTLCKVKFK GERREFSVAS SSRIEHTRSL IPHTNNSGGL 180 SVETEGSSFH SQESQNPSQF TANLDVDALD CFNDFESFFN DDDEQSKIDS MQDDHNTHRG 240 DQE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-22 | 1 | 147 | 15 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-22 | 1 | 147 | 15 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-22 | 1 | 147 | 15 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-22 | 1 | 147 | 15 | 162 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-22 | 1 | 147 | 18 | 165 | NAC domain-containing protein 19 |
3swm_B | 2e-22 | 1 | 147 | 18 | 165 | NAC domain-containing protein 19 |
3swm_C | 2e-22 | 1 | 147 | 18 | 165 | NAC domain-containing protein 19 |
3swm_D | 2e-22 | 1 | 147 | 18 | 165 | NAC domain-containing protein 19 |
3swp_A | 2e-22 | 1 | 147 | 18 | 165 | NAC domain-containing protein 19 |
3swp_B | 2e-22 | 1 | 147 | 18 | 165 | NAC domain-containing protein 19 |
3swp_C | 2e-22 | 1 | 147 | 18 | 165 | NAC domain-containing protein 19 |
3swp_D | 2e-22 | 1 | 147 | 18 | 165 | NAC domain-containing protein 19 |
4dul_A | 2e-22 | 1 | 147 | 15 | 162 | NAC domain-containing protein 19 |
4dul_B | 2e-22 | 1 | 147 | 15 | 162 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.5325s0006.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493425 | 0.0 | AB493425.1 Arabidopsis thaliana At1g02250 mRNA for hypothetical protein, partial cds, clone: RAAt1g02250. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_171727.2 | 1e-135 | NAC domain containing protein 5 | ||||
Swissprot | O81914 | 1e-136 | NAC5_ARATH; NAC domain-containing protein 5 | ||||
TrEMBL | A0A178W508 | 1e-134 | A0A178W508_ARATH; NAC005 | ||||
STRING | Bostr.5325s0006.1.p | 1e-178 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 1e-129 | NAC domain containing protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.5325s0006.2.p |
Publications ? help Back to Top | |||
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