PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.5325s0006.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

NAC

Protein Properties

Length: 273aa MW: 31228.3 Da PI: 6.5141

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.5325s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	129.2	3.1e-40	4	132	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 p+G+rF+Pt+ e+ + yL++k +++ +++evi++vdi++++Pw+Lp + ++k +++ wyfF ++++ky +g+++nr+t+sg+Wk+tg Bostr.5325s0006.1.p 4 PVGLRFRPTNVEIFDIYLRPKNLQSNtSHVDEVITTVDICSFDPWNLPsQsRMKIKDRVWYFFGRKENKYGRGDQQNRKTESGFWKKTGP 93 89***************99665553788889**********9635888899***************************** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++k ++e++g kk+L+f +++g+ktdWvmhey++ Bostr.5325s0006.1.p 94 TMDIMRKsgNREKIGEKKVLTFK---NRDGSKTDWVMHEYHA 132 **9888889*****7...78899*******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-43	3	150	IPR003441	NAC domain
PROSITE profile	PS51005	42.012	3	150	IPR003441	NAC domain
Pfam	PF02365	4.6E-21	4	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MANPVGLRFR PTNVEIFDIY LRPKNLQSNT SHVDEVITTV DICSFDPWNL PSQSRMKIKD 60 RVWYFFGRKE NKYGRGDQQN RKTESGFWKK TGPTMDIMRK SGNREKIGEK KVLTFKNRDG 120 SKTDWVMHEY HATSPNQMMM TYTLCKVKFK GERREFSVAS SSRIEHTRSL IPHTNNSGGL 180 SVETEGSSFH SQESQNPSQI THTNNSGGLS VETEGSSFHS QESQNPSQFT ANLDVDALDC 240 FNDFESFFND DDEQSKIDSM QDDHNTHRGD QE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-22	1	147	15	162	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-22	1	147	15	162	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-22	1	147	15	162	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-22	1	147	15	162	NO APICAL MERISTEM PROTEIN
4dul_A	2e-22	1	147	15	162	NAC domain-containing protein 19
4dul_B	2e-22	1	147	15	162	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.5325s0006.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493425	0.0	AB493425.1 Arabidopsis thaliana At1g02250 mRNA for hypothetical protein, partial cds, clone: RAAt1g02250.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_171727.2	1e-129	NAC domain containing protein 5
Swissprot	O81914	1e-130	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	A0A178W508	1e-128	A0A178W508_ARATH; NAC005
STRING	Bostr.5325s0006.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	1e-123	NAC domain containing protein 5

Link Out ? help Back to Top
Phytozome	Bostr.5325s0006.1.p

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]