PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.5022s0117.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

GeBP

Protein Properties

Length: 352aa MW: 39324 Da PI: 6.1268

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.5022s0117.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	94.6	1e-29	68	162	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 lf r+w+eeDe++lL+Gl+d+kak g + + d dafy+f+ +si +k+sk+q+ +Kir+L+ +f + +k+++g++ ++++++++f+l Bostr.5022s0117.1.p 68 LFIRIWNEEDELALLKGLVDYKAKSGYNTKIDRDAFYRFLGGSIVAKFSKNQVYSKIRKLRSRFLVHLEKTNEGND--SKSSSYSEAFGL 155 688*****************************************************************777777..6778889* PP DUF573 92 skkiWgs 98 s++iWg+ Bostr.5022s0117.1.p 156 SMMIWGQ 162 ***96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	6.2E-23	70	161	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MPPKIMVSPK QLNLSSSGGA GDCDDTFARR KSLRNFSSKR AASDAAEEET KKKKKKTKKE 60 KTKSDSPLFI RIWNEEDELA LLKGLVDYKA KSGYNTKIDR DAFYRFLGGS IVAKFSKNQV 120 YSKIRKLRSR FLVHLEKTNE GNDSKSSSYS EAFGLSMMIW GQNQAEFAHD DDGISKEMLK 180 EHEEPINENG ALIITDNGTA RVAQQSESGE EMLKENEEPV NENGAVIITD NGTARVAQQS 240 ESGEEMLKEH EEKRVNENEA AKTTESGTNA GKESHDDDDE LCAVRDAFKS VMSQGLSDYQ 300 KKLQLEKLMN IGTGKRRELS NEWKALCVEE GRLKIMKLRF SVKLAEAAND S*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MPPKIMVSPK QLNLSSSGGA GDCDDTFARR KSLRNFSSKR AASDAAEEET KKKKKKTKKE  60
KTKSDSPLFI RIWNEEDELA LLKGLVDYKA KSGYNTKIDR DAFYRFLGGS IVAKFSKNQV  120
YSKIRKLRSR FLVHLEKTNE GNDSKSSSYS EAFGLSMMIW GQNQAEFAHD DDGISKEMLK  180
EHEEPINENG ALIITDNGTA RVAQQSESGE EMLKENEEPV NENGAVIITD NGTARVAQQS  240
ESGEEMLKEH EEKRVNENEA AKTTESGTNA GKESHDDDDE LCAVRDAFKS VMSQGLSDYQ  300
KKLQLEKLMN IGTGKRRELS NEWKALCVEE GRLKIMKLRF SVKLAEAAND S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	58	KKKKKKTKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. May play redundant roles with GEBP and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893, ECO:0000305\|PubMed:18162594}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.5022s0117.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006053	4e-92	AC006053.3 Arabidopsis thaliana chromosome 2 clone F3N11 map B68, complete sequence.
GenBank	AY096417	4e-92	AY096417.1 Arabidopsis thaliana unknown protein (At2g25650) mRNA, complete cds.
GenBank	CP002685	4e-92	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020884342.1	1e-138	GLABROUS1 enhancer-binding protein-like 1
Swissprot	Q8VYD2	1e-136	STKLH_ARATH; GLABROUS1 enhancer-binding protein-like 1
TrEMBL	R0G0S3	1e-125	R0G0S3_9BRAS; Uncharacterized protein
STRING	Bostr.5022s0117.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25650.1	1e-137	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Bostr.5022s0117.1.p

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]