PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.5022s0042.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | B3 | ||||||||
Protein Properties | Length: 125aa MW: 14602.6 Da PI: 4.9271 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.1 | 1e-10 | 14 | 103 | 3 | 83 |
EE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 k+l++sdv ++grl lpk+ + + + +++++l + d ++ s++v l+ r++ + yvl++GW+ + +LkegD + Bostr.5022s0042.1.p 14 KTLSRSDVDQHGRLFLPKNQVLSVfkkmkdvtneS--LQKGIELEVLDiIENDSYSVILKSRNTTNDYVLASGWSIIKYSLDLKEGDNFK 101 89******************999999888777433..338889999998888*******99**************************988 PP EE CS B3 82 Fk 83 ++ Bostr.5022s0042.1.p 102 LY 103 77 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-12 | 8 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.25E-13 | 10 | 116 | No hit | No description |
SuperFamily | SSF101936 | 2.09E-14 | 10 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.6E-11 | 12 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-7 | 14 | 104 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MEDFRIDGER ILSKTLSRSD VDQHGRLFLP KNQVLSVFKK MKDVTNESLQ KGIELEVLDI 60 IENDSYSVIL KSRNTTNDYV LASGWSIIKY SLDLKEGDNF KLYWDYLNYK FIILNFEYSL 120 ISFN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.5022s0042.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007019 | 1e-116 | AC007019.5 Arabidopsis thaliana chromosome 2 clone F7D8 map mi238, complete sequence. | |||
GenBank | CP002685 | 1e-116 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_179783.1 | 7e-67 | F-box associated ubiquitination effector family protein | ||||
Swissprot | Q9SJ07 | 6e-68 | Y2192_ARATH; Putative B3 domain-containing protein At2g21920 | ||||
TrEMBL | R0G129 | 4e-64 | R0G129_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Bostr.5022s0042.1.p | 1e-83 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15428 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08985.1 | 1e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.5022s0042.1.p |