PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.5022s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family CAMTA
Protein Properties Length: 1027aa    MW: 115336 Da    PI: 5.2007
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.5022s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1182.54.8e-57201363118
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwl++ ei++iL+n++++++++e++t+p+sgs+++++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+++n
  Bostr.5022s0003.1.p  20 SEaRHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGQDN 109
                          4449************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                          ++fqrr+ywlL+eel++iv+vhylevk
  Bostr.5022s0003.1.p 110 ENFQRRSYWLLQEELSHIVFVHYLEVK 136
                          ************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.70815141IPR005559CG-1 DNA-binding domain
SMARTSM010763.4E-8518136IPR005559CG-1 DNA-binding domain
PfamPF038599.9E-5021135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.8E-4458546IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.71E-16460545IPR014756Immunoglobulin E-set
SuperFamilySSF484032.95E-15629751IPR020683Ankyrin repeat-containing domain
CDDcd002043.99E-11636748No hitNo description
Gene3DG3DSA:1.25.40.204.0E-15636751IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.149639748IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.164689721IPR002110Ankyrin repeat
SMARTSM000150.92846868IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.67E-8846897IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500969.029848876IPR000048IQ motif, EF-hand binding site
PfamPF006120.0041849867IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0011869891IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.468870894IPR000048IQ motif, EF-hand binding site
PfamPF006121.2E-4872891IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1027 aa     Download sequence    Send to blast
MAEARRFSPV NEFDVGQILS EARHRWLRPP EICEILQNYQ RFQISTEPPT TPSSGSVFMF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWLL  120
QEELSHIVFV HYLEVKGSRV STSFNRMQRT EDAAQETGEA LTSEHDGYAS CSFNQNDHSN  180
HSQTTDSASV NGFHTPELED AESAYNQHGS SIVYSHQELQ QPATGGNLTG FDPYYQVSLT  240
PTDSYQKELR TIPITDSSVM VEKSKTINGP GVTNGLRNRK SIDSQTWEEI LGNCGSGVEG  300
LPLQPNSEHE VLDQILSFTE QDFTILQESM IKSRNQELNS GVISDHTVWF QGQDIEPNAI  360
SNLASNEKAP YLSTMKQHLL DGALGEEGLK KMDSFNRWMS KELGDVGVIA DANESFTQSS  420
SRTYWEEVES EDGTNGHNSR RDLDGYVMSP SLSKEQLFSI NDFSPSWTYV GCEVVVFVTG  480
KFLKTREEAE IGEWSCMFGQ TEVPADVIAN GVLQCVAPMH EAGRVPFYVT CSNRLACSEV  540
REFEYKVAES QILDRETDDE STIEILEARF VKLLCSKSES SSPVSGNDSD LSQVSEKISL  600
LLFENDDQLD QMLMNEISQE NMKKNLLQEF LKESLHSWLL QKIAEGGKGP SVLDEGGQGV  660
LHFAASLGYN WALEPTIIAG VSVDFRDVNG WTALHWAAFF GRERIIGSLI ALGAAPGTLT  720
DPNPDFPSGS TPSDLAYANG HKGIAGYLSE YALRAHVSLL SLNDNNAETV ETAPSPSSSS  780
LTDSLTAVRN ATQAAARIHQ VFRAQSFQKK QLKEFGDRKL GMSEERALSM LAPKTHKSGR  840
AHSNDSVQAA AIRIQNKFRG YKGRKDYLIT RQRIIKIQAH VRGYQVRKNY RKIIWSVGIL  900
EKVILRWRRK GAGLRGFKSD ALVDKMQDGT EKEEDDDFFK QGRKQTEERL QKALARVKSM  960
VQYPEARDQY RRLLNVVNDI QESKVEKALE NSEGTTCFDD DLIDIEALLE DDDTLMLPMS  1020
SSLWNS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.5022s0003.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5066970.0AF506697.1 Arabidopsis thaliana calmodulin-binding transcription factor SR1 (SR1) mRNA, complete cds.
GenBankAY5100250.0AY510025.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 1 mRNA, complete cds.
GenBankBT0024590.0BT002459.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295625.10.0calmodulin-binding transcription activator 3 isoform X2
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLR0HWU60.0R0HWU6_9BRAS; Uncharacterized protein
STRINGBostr.5022s0003.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86012535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]