PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.5022s0003.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

CAMTA

Protein Properties

Length: 1027aa MW: 115336 Da PI: 5.2007

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.5022s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	182.5	4.8e-57	20	136	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 +e ++rwl++ ei++iL+n++++++++e++t+p+sgs+++++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+++n Bostr.5022s0003.1.p 20 SEaRHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGQDN 109 4449************************************************************************************ PP CG-1 92 ptfqrrcywlLeeelekivlvhylevk 118 ++fqrr+ywlL+eel++iv+vhylevk Bostr.5022s0003.1.p 110 ENFQRRSYWLLQEELSHIVFVHYLEVK 136 **********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.708	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.4E-85	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	9.9E-50	21	135	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	4.8E-4	458	546	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.71E-16	460	545	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	2.95E-15	629	751	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.99E-11	636	748	No hit	No description
Gene3D	G3DSA:1.25.40.20	4.0E-15	636	751	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.149	639	748	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.164	689	721	IPR002110	Ankyrin repeat
SMART	SM00015	0.92	846	868	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.67E-8	846	897	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	9.029	848	876	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0041	849	867	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0011	869	891	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.468	870	894	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.2E-4	872	891	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1027 aa Download sequence Send to blast
MAEARRFSPV NEFDVGQILS EARHRWLRPP EICEILQNYQ RFQISTEPPT TPSSGSVFMF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWLL 120 QEELSHIVFV HYLEVKGSRV STSFNRMQRT EDAAQETGEA LTSEHDGYAS CSFNQNDHSN 180 HSQTTDSASV NGFHTPELED AESAYNQHGS SIVYSHQELQ QPATGGNLTG FDPYYQVSLT 240 PTDSYQKELR TIPITDSSVM VEKSKTINGP GVTNGLRNRK SIDSQTWEEI LGNCGSGVEG 300 LPLQPNSEHE VLDQILSFTE QDFTILQESM IKSRNQELNS GVISDHTVWF QGQDIEPNAI 360 SNLASNEKAP YLSTMKQHLL DGALGEEGLK KMDSFNRWMS KELGDVGVIA DANESFTQSS 420 SRTYWEEVES EDGTNGHNSR RDLDGYVMSP SLSKEQLFSI NDFSPSWTYV GCEVVVFVTG 480 KFLKTREEAE IGEWSCMFGQ TEVPADVIAN GVLQCVAPMH EAGRVPFYVT CSNRLACSEV 540 REFEYKVAES QILDRETDDE STIEILEARF VKLLCSKSES SSPVSGNDSD LSQVSEKISL 600 LLFENDDQLD QMLMNEISQE NMKKNLLQEF LKESLHSWLL QKIAEGGKGP SVLDEGGQGV 660 LHFAASLGYN WALEPTIIAG VSVDFRDVNG WTALHWAAFF GRERIIGSLI ALGAAPGTLT 720 DPNPDFPSGS TPSDLAYANG HKGIAGYLSE YALRAHVSLL SLNDNNAETV ETAPSPSSSS 780 LTDSLTAVRN ATQAAARIHQ VFRAQSFQKK QLKEFGDRKL GMSEERALSM LAPKTHKSGR 840 AHSNDSVQAA AIRIQNKFRG YKGRKDYLIT RQRIIKIQAH VRGYQVRKNY RKIIWSVGIL 900 EKVILRWRRK GAGLRGFKSD ALVDKMQDGT EKEEDDDFFK QGRKQTEERL QKALARVKSM 960 VQYPEARDQY RRLLNVVNDI QESKVEKALE NSEGTTCFDD DLIDIEALLE DDDTLMLPMS 1020 SSLWNS*

Sequence ? help Back to Top

Protein Sequence Length: 1027 aa Download sequence Send to blast

MAEARRFSPV NEFDVGQILS EARHRWLRPP EICEILQNYQ RFQISTEPPT TPSSGSVFMF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWLL  120
QEELSHIVFV HYLEVKGSRV STSFNRMQRT EDAAQETGEA LTSEHDGYAS CSFNQNDHSN  180
HSQTTDSASV NGFHTPELED AESAYNQHGS SIVYSHQELQ QPATGGNLTG FDPYYQVSLT  240
PTDSYQKELR TIPITDSSVM VEKSKTINGP GVTNGLRNRK SIDSQTWEEI LGNCGSGVEG  300
LPLQPNSEHE VLDQILSFTE QDFTILQESM IKSRNQELNS GVISDHTVWF QGQDIEPNAI  360
SNLASNEKAP YLSTMKQHLL DGALGEEGLK KMDSFNRWMS KELGDVGVIA DANESFTQSS  420
SRTYWEEVES EDGTNGHNSR RDLDGYVMSP SLSKEQLFSI NDFSPSWTYV GCEVVVFVTG  480
KFLKTREEAE IGEWSCMFGQ TEVPADVIAN GVLQCVAPMH EAGRVPFYVT CSNRLACSEV  540
REFEYKVAES QILDRETDDE STIEILEARF VKLLCSKSES SSPVSGNDSD LSQVSEKISL  600
LLFENDDQLD QMLMNEISQE NMKKNLLQEF LKESLHSWLL QKIAEGGKGP SVLDEGGQGV  660
LHFAASLGYN WALEPTIIAG VSVDFRDVNG WTALHWAAFF GRERIIGSLI ALGAAPGTLT  720
DPNPDFPSGS TPSDLAYANG HKGIAGYLSE YALRAHVSLL SLNDNNAETV ETAPSPSSSS  780
LTDSLTAVRN ATQAAARIHQ VFRAQSFQKK QLKEFGDRKL GMSEERALSM LAPKTHKSGR  840
AHSNDSVQAA AIRIQNKFRG YKGRKDYLIT RQRIIKIQAH VRGYQVRKNY RKIIWSVGIL  900
EKVILRWRRK GAGLRGFKSD ALVDKMQDGT EKEEDDDFFK QGRKQTEERL QKALARVKSM  960
VQYPEARDQY RRLLNVVNDI QESKVEKALE NSEGTTCFDD DLIDIEALLE DDDTLMLPMS  1020
SSLWNS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.5022s0003.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF506697	0.0	AF506697.1 Arabidopsis thaliana calmodulin-binding transcription factor SR1 (SR1) mRNA, complete cds.
GenBank	AY510025	0.0	AY510025.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 1 mRNA, complete cds.
GenBank	BT002459	0.0	BT002459.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006295625.1	0.0	calmodulin-binding transcription activator 3 isoform X2
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	R0HWU6	0.0	R0HWU6_9BRAS; Uncharacterized protein
STRING	Bostr.5022s0003.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8601	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Link Out ? help Back to Top
Phytozome	Bostr.5022s0003.1.p

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]