PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.4825s0024.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 438aa    MW: 49589.5 Da    PI: 4.8232
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.4825s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1225.3e-38211492128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          p G+rF+Ptdeelv++yLk k  g++  +ee+i+e++i+++eP+ Lp  +k++++  e yfFs+ + ++a+++ ++r t sgyWk tg  
  Bostr.4825s0024.1.p  21 PIGLRFSPTDEELVNHYLKLKNLGNTRLVEEAISEINILSYEPEVLPslAKIQSDVPESYFFSRIEYANARNNARKRRTGSGYWKPTGVG 110
                          78************************888899***************5448888888***********99988888889*********** PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + + +k+g ++g ++tLv+ykg+a +g++t+W mhey++
  Bostr.4825s0024.1.p 111 RIIRDKTGVEIGRRNTLVYYKGKAANGVRTHWHMHEYQI 149
                          *************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-4120167IPR003441NAC domain
PROSITE profilePS5100541.18420167IPR003441NAC domain
PfamPF023659.0E-2121149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MVKDLIGLAD QKKKKKKKKD PIGLRFSPTD EELVNHYLKL KNLGNTRLVE EAISEINILS  60
YEPEVLPSLA KIQSDVPESY FFSRIEYANA RNNARKRRTG SGYWKPTGVG RIIRDKTGVE  120
IGRRNTLVYY KGKAANGVRT HWHMHEYQIT CLPDDQTTYV LCKVKKKDKG GDIRSGGNSS  180
SVPSPSLVSD SNTIRAMINT APEFQVDQQP GQENVYGLSA DELRVPIIEQ EDLILPDAFD  240
PNTLVSDLQQ QTPYNDDSWS GFPDCNGENF EDFEQPGQEN VYGLSADELR VPINQQVDLS  300
PPDAFAPNTF FSDHNHPNVQ QQTPYNDDFL SELLGYNGRN FEDMFSYQNF RMQEEHNDYM  360
LRNTVTATTI TTAFEFEQPG QENVYRNDHW PTKPLSVIIV SDSDIDAESI SAVVKHMWMI  420
IGFSILLALI GKIISVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-212116721168NAC domain-containing protein 19
3swm_B1e-212116721168NAC domain-containing protein 19
3swm_C1e-212116721168NAC domain-containing protein 19
3swm_D1e-212116721168NAC domain-containing protein 19
3swp_A1e-212116721168NAC domain-containing protein 19
3swp_B1e-212116721168NAC domain-containing protein 19
3swp_C1e-212116721168NAC domain-containing protein 19
3swp_D1e-212116721168NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11218KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.4825s0024.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456147.14e-91PREDICTED: NAC domain-containing protein 69
TrEMBLD7M4U23e-88D7M4U2_ARALL; ANAC068/NTM1
STRINGBostr.4825s0024.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01540.29e-71NAC with transmembrane motif1