PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.4825s0023.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 446aa    MW: 50333.5 Da    PI: 6.4372
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.4825s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM137.67.8e-4361353128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          +G+rF+Pt eel+++yLk+k+ gk+  ++e+i+e++i+++eP  Lp  +k+k+++  wyfFs+++ ++ +++ ++r+t+sgyWkatg d+
  Bostr.4825s0023.1.p   6 VGYRFSPTGEELINYYLKNKILGKTWLVDEAISEINICSYEPIYLPslSKIKSDDPVWYFFSPKEYTSVKKNVTKRTTSSGYWKATGVDR 95 
                          7************************999999***************5449999999********************************** PP

                  NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++++k  ++ ++g+kktLv+y+gr pkg++t+Wvmhey++
  Bostr.4825s0023.1.p  96 KIKDKrgNRGEIGIKKTLVYYEGRVPKGVRTSWVMHEYHI 135
                          ****9666667***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.3154153IPR003441NAC domain
SuperFamilySSF1019418.11E-466153IPR003441NAC domain
PfamPF023653.1E-256135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEKDLVGYRF SPTGEELINY YLKNKILGKT WLVDEAISEI NICSYEPIYL PSLSKIKSDD  60
PVWYFFSPKE YTSVKKNVTK RTTSSGYWKA TGVDRKIKDK RGNRGEIGIK KTLVYYEGRV  120
PKGVRTSWVM HEYHITCLPQ DQRNYVICQV MYKGEDGDIP SGGNYSSEPS QSLVSDSNTF  180
RATINTAHEF EQPGQENIFC ISVDDLKSPM NDQEDLSLWD VLNPDMFVSD NNNPTVQPQA  240
SHLAPNDNEF LGGLRHVDRG KVEFLFANEE FISRPTTSMQ ENRNDHRPKK ALSGIILEYS  300
CDTDSDAESI SATSYQGSSS PGDSVGSSNR HSQPGLDETI SLSKDLQTSD KPSISRKTRE  360
SQLARRTIPS KQEVKHNTSR AADASIDKES SMVKTEKKGW FITEEATERN HKNPKYIYLM  420
RMIIGFILLL ALIDNIISVL LTVKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-25715320165NO APICAL MERISTEM PROTEIN
1ut4_B6e-25715320165NO APICAL MERISTEM PROTEIN
1ut7_A6e-25715320165NO APICAL MERISTEM PROTEIN
1ut7_B6e-25715320165NO APICAL MERISTEM PROTEIN
3swm_A8e-25715323168NAC domain-containing protein 19
3swm_B8e-25715323168NAC domain-containing protein 19
3swm_C8e-25715323168NAC domain-containing protein 19
3swm_D8e-25715323168NAC domain-containing protein 19
3swp_A8e-25715323168NAC domain-containing protein 19
3swp_B8e-25715323168NAC domain-containing protein 19
3swp_C8e-25715323168NAC domain-containing protein 19
3swp_D8e-25715323168NAC domain-containing protein 19
4dul_A6e-25715320165NAC domain-containing protein 19
4dul_B6e-25715320165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00426DAPTransfer from AT4G01550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.4825s0023.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293120.0AK229312.1 Arabidopsis thaliana mRNA for putative NAM-like protein, complete cds, clone: RAFL16-57-J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_192064.10.0NAC domain containing protein 69
SwissprotQ9M1260.0NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A178V0810.0A0A178V081_ARATH; NTM2
STRINGBostr.4825s0023.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.10.0NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]