PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.4825s0021.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

NAC

Protein Properties

Length: 637aa MW: 72308.4 Da PI: 4.3972

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.4825s0021.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.4	1.7e-33	6	128	3	121
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 G+rF+Pt eelv++yLk+k g+++ ++e+i+e++i+++ P+dLp +k+++++ +wyfFs+ + ++a++k +r+t sg+Wk tgkd+ Bostr.4825s0021.1.p 6 IGYRFSPTGEELVNHYLKNKNLGNTCLVDEAISEINILNYIPEDLPglAKIQSDDLKWYFFSRIEYTNAKKKAMKRSTGSGFWKPTGKDR 95 69*********************999999***********6558888888****************************** PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdW 121 + +k +g ++glkktLv+++ +a +g++tdW Bostr.4825s0021.1.p 96 IIRDKrrNGVEIGLKKTLVYHERKALNGVRTDW 128 998777888********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	32.686	4	163	IPR003441	NAC domain
SuperFamily	SSF101941	7.32E-36	5	139	IPR003441	NAC domain
Pfam	PF02365	4.1E-17	7	128	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence Send to blast
MVKDLIGYRF SPTGEELVNH YLKNKNLGNT CLVDEAISEI NILNYIPEDL PGLAKIQSDD 60 LKWYFFSRIE YTNAKKKAMK RSTGSGFWKP TGKDRIIRDK RRNGVEIGLK KTLVYHERKA 120 LNGVRTDWRT YVICQVMYKD EDGDIPSGGN YSSEPSQSLV SDSNTIRVTS IPPVVSPVSD 180 MFPDPLVSTC FFTRYLFLQF QVEQQPGQDN YYGLSENDLR TPLNEQADLS ECDGFDPNTF 240 FSDDNNNHLQ LQTPYLPQDD GEFMCGLPSA YRAIAQHLLS DQDSIMQEEY NDYMLMNTVT 300 AETITTASEV NPVFEIFLYP LISTCFKDSH SLLHFQYEQP GQDNYYGLSA DELRVPINEQ 360 VDLFPPDAFD PNTLFSDYNH PNLQQQTPYN DDYWSGLLGY NGENFEDVVS DQESIMQEEY 420 NDYMLMNTVT ATSTTASEPQ APHLAPDDYE LLGGLRHVDR GQVEYLSPNE EFVSRLTTSM 480 TENRNDHRPK KPLSGIIVDY SSDSDIDAES ISAMSYQGTS SPGDSVGSSN RHSQTGLDEI 540 ISFSKDLQTS DEPSISRKTR ESQLVKHNTS RAADASIDKE SSMVKTEKKG WFIREEAMER 600 NHKNPWYIHL MRMIIGFILL LAFIGNIISV LLTVQT*

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence Send to blast

MVKDLIGYRF SPTGEELVNH YLKNKNLGNT CLVDEAISEI NILNYIPEDL PGLAKIQSDD  60
LKWYFFSRIE YTNAKKKAMK RSTGSGFWKP TGKDRIIRDK RRNGVEIGLK KTLVYHERKA  120
LNGVRTDWRT YVICQVMYKD EDGDIPSGGN YSSEPSQSLV SDSNTIRVTS IPPVVSPVSD  180
MFPDPLVSTC FFTRYLFLQF QVEQQPGQDN YYGLSENDLR TPLNEQADLS ECDGFDPNTF  240
FSDDNNNHLQ LQTPYLPQDD GEFMCGLPSA YRAIAQHLLS DQDSIMQEEY NDYMLMNTVT  300
AETITTASEV NPVFEIFLYP LISTCFKDSH SLLHFQYEQP GQDNYYGLSA DELRVPINEQ  360
VDLFPPDAFD PNTLFSDYNH PNLQQQTPYN DDYWSGLLGY NGENFEDVVS DQESIMQEEY  420
NDYMLMNTVT ATSTTASEPQ APHLAPDDYE LLGGLRHVDR GQVEYLSPNE EFVSRLTTSM  480
TENRNDHRPK KPLSGIIVDY SSDSDIDAES ISAMSYQGTS SPGDSVGSSN RHSQTGLDEI  540
ISFSKDLQTS DEPSISRKTR ESQLVKHNTS RAADASIDKE SSMVKTEKKG WFIREEAMER  600
NHKNPWYIHL MRMIIGFILL LAFIGNIISV LLTVQT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-17	7	128	18	133	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269\|PubMed:21450938}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.4825s0021.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269\|PubMed:21450938}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK229312	4e-81	AK229312.1 Arabidopsis thaliana mRNA for putative NAM-like protein, complete cds, clone: RAFL16-57-J19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010456147.1	1e-98	PREDICTED: NAC domain-containing protein 69
Swissprot	Q9M126	1e-93	NAC69_ARATH; NAC domain-containing protein 69
TrEMBL	R0GRZ7	4e-93	R0GRZ7_9BRAS; Uncharacterized protein
STRING	Bostr.4825s0021.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1982	19	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	4e-95	NAC domain containing protein 69

Link Out ? help Back to Top
Phytozome	Bostr.4825s0021.1.p

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] He L, et al. Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance. Plant Mol. Biol., 2017. 93(4-5): p. 369-387 [PMID:27975189]