PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.4825s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB | ||||||||
Protein Properties | Length: 342aa MW: 38506.9 Da PI: 7.5851 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl Bostr.4825s0008.1.p 14 KGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.6 | 1.6e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ Bostr.4825s0008.1.p 67 RGAFSQDEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-28 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.666 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-30 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.57E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.799 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.9E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.43E-9 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLRYIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SQDEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRLRG 120 IDPVTHKLLT EIESGTDDKP KPVEKSQQTY LIETEGSSST TTCSTNQNNN TDHLYTGNFG 180 FQRLSLENGS RIATGSDLGI WIPQTGNHHH HHVDENVPSA VVLPGSMFSP GLTGYRSSNL 240 GLIELENSFS TGPMMTEQQQ LQESNYNNST FFGTGNLNWG LTMEENQNPF TISNNSLRNH 300 SNSSLYSDIK SETNFFGTEV TNVGMWPCNQ LQPQQHAYGH I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00427 | DAP | Transfer from AT4G01680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.4825s0008.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF176000 | 0.0 | AF176000.2 Arabidopsis thaliana putative transcription factor (MYB55) mRNA, complete cds. | |||
GenBank | AY054575 | 0.0 | AY054575.1 Arabidopsis thaliana Unknown protein (At4g01680; T15B16.4) mRNA, complete cds. | |||
GenBank | BT000352 | 0.0 | BT000352.1 Arabidopsis thaliana Unknown protein (At4g01680) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879491.1 | 0.0 | transcription repressor MYB6 isoform X1 | ||||
Refseq | XP_020879492.1 | 0.0 | transcription repressor MYB6 isoform X1 | ||||
Swissprot | Q8VZQ2 | 3e-85 | MYB61_ARATH; Transcription factor MYB61 | ||||
TrEMBL | A0A178V2Q7 | 0.0 | A0A178V2Q7_ARATH; MYB55 | ||||
STRING | Bostr.4825s0008.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.1 | 0.0 | myb domain protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.4825s0008.1.p |
Publications ? help Back to Top | |||
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