PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.4825s0004.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | WRKY | ||||||||
Protein Properties | Length: 468aa MW: 51554.1 Da PI: 7.2616 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.6 | 3.9e-31 | 214 | 273 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ Bostr.4825s0004.2.p 214 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTTILTTTYEGNHNHP 273 58*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.9E-33 | 199 | 275 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.06E-27 | 207 | 275 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.908 | 209 | 275 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-37 | 214 | 274 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-26 | 215 | 273 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MEENTHQDRR EIAFLHSGEF LRGDSDSKDH QPNESSEEHR RESSIKEVDF FSAKSQPYDI 60 GHVRTTTIVG SSGFKIIRLK LELERLHEEN HKLKHLLEEI SESYNDLQRR VLLVRQTQVE 120 GLHKQHEDIP QAGSSQALED RRPKDMNNEI PATTLKRRSP DDVDDRDMHR GSPKNLRLDQ 180 SKSANREEQQ NPHDQLPFRK ARVSVRARSD ATAVNDGCQW RKYGQKMAKG NPCPRAYYRC 240 TMAVGCPVRK QVQRCAEDTT ILTTTYEGNH NHPLPPSATA MAATTSAAAA MLLSGSTTSN 300 LHQTLSSPSA TSSSSFYHNF PYTSTIATLS ASAPFPTITL DLTNPPRPLQ PPPQFLSQYG 360 PAAFLPNANQ ISSMNNNNPQ LLLPNLLGPQ AIPRDMVDSV RAAIAMDPNF TAALAAAISN 420 IIGGGNNDNN NNNNNDINNN KVDAKSGGSS NGDSPQLPQS CTTFATN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-22 | 201 | 276 | 1 | 75 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00115 | ampDAP | Transfer from AT4G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.4825s0004.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF480165 | 0.0 | AF480165.1 Arabidopsis thaliana WRKY transcription factor 47 (WRKY47) mRNA, complete cds. | |||
GenBank | AK229522 | 0.0 | AK229522.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL17-27-A10. | |||
GenBank | BT008704 | 0.0 | BT008704.1 Arabidopsis thaliana clone RAFL17-27-A10 (R50576) putative WRKY family transcription factor (At4g01720) mRNA, complete cds. | |||
GenBank | BT029024 | 0.0 | BT029024.1 Arabidopsis thaliana At4g01720 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879345.1 | 0.0 | probable WRKY transcription factor 47 | ||||
Swissprot | Q9ZSI7 | 0.0 | WRK47_ARATH; Probable WRKY transcription factor 47 | ||||
TrEMBL | D7M496 | 0.0 | D7M496_ARALL; WRKY DNA-binding protein 47 | ||||
STRING | Bostr.4825s0004.1.p | 0.0 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01720.1 | 0.0 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.4825s0004.2.p |