PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.3877s0058.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ERF | ||||||||
Protein Properties | Length: 151aa MW: 17337.1 Da PI: 10.3394 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.8 | 9.9e-17 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykG+r +k +g+WvAeIr+ps+ r r++lg++ ta Aa+a++ a+ +l+g Bostr.3877s0058.1.p 35 RYKGIRMRK-WGKWVAEIREPSK---RSRIWLGSYKTAVAAARAYDTAAVYLRG 84 8******99.**********976...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.99E-18 | 34 | 93 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-20 | 35 | 93 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.326 | 35 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-9 | 35 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-29 | 35 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-35 | 35 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MEIEYKRKQD FPMVKEELVM NEKPKRNLMI PKEKRYKGIR MRKWGKWVAE IREPSKRSRI 60 WLGSYKTAVA AARAYDTAAV YLRGRSTRVN FPEEVFKDGN GFEGVGGDMS ATFIRQKAAE 120 VGARVDAELW LDNNMVAKLD MNKLPEAYGL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 32 | 95 | 2 | 66 | ATERF1 |
3gcc_A | 2e-15 | 32 | 95 | 2 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00430 | DAP | Transfer from AT4G06746 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.3877s0058.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010438722.1 | 1e-87 | PREDICTED: ethylene-responsive transcription factor RAP2-9 | ||||
Swissprot | Q8W3M3 | 2e-78 | RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9 | ||||
TrEMBL | A0A178U651 | 2e-75 | A0A178U651_ARATH; RAP2.9 | ||||
STRING | Bostr.3877s0058.1.p | 1e-106 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06746.1 | 1e-68 | related to AP2 9 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.3877s0058.1.p |
Publications ? help Back to Top | |||
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