PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.3751s0043.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 466aa MW: 53011.5 Da PI: 8.2298

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.3751s0043.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.2	2.9e-25	58	107	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s +++++s+R+++++KKA+ELS+LC++ev+vi+++++gkl+++++ Bostr.3751s0043.1.p 58 SSSSYSLASTSLSNRLKTVFKKASELSILCEIEVCVIYYGPDGKLKTWPK 107 799*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.7E-5	48	108	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.3E-14	66	105	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.989	67	109	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-15	67	141	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.06E-15	72	133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MSESEKYKCN FLTLATKNFY KYIYYTKFLS HCHTSSSFVT KPKFVSEITM RSSRSSSSSS 60 SYSLASTSLS NRLKTVFKKA SELSILCEIE VCVIYYGPDG KLKTWPKEKE KVKDMALRYS 120 QLTEALRRKK SVNLYGFLNK KKIKDLMNLN KERKTGPKKV NGLKYPISDH YSSDQVSQLI 180 QSLELNFSIF QERLRIVESK KHKETKLDHQ SLASSSLNHQ QDQHLQTQSL NPSQFSLIMY 240 NHGDNSFSQI PVSASNFNQD FSALLQESEL KNHLMKQELC GYGQNMCMSD ITNNNFQYSC 300 VSNKEAVQES MNNFGLNQLM QKQFYGCNQN MCMGNINSNN FQHPCVSNTE HYSAVQESVN 360 NIGLNQLMQH ELYGYDQNMC TSHITNSNVP DPGLSNTVSY GFCSDYQDSC GNNMVGNTSF 420 SQNLSDMSSN YVFNFDESSL FQTSTLPSLS TIPNSYLLSD NSRFL*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MSESEKYKCN FLTLATKNFY KYIYYTKFLS HCHTSSSFVT KPKFVSEITM RSSRSSSSSS  60
SYSLASTSLS NRLKTVFKKA SELSILCEIE VCVIYYGPDG KLKTWPKEKE KVKDMALRYS  120
QLTEALRRKK SVNLYGFLNK KKIKDLMNLN KERKTGPKKV NGLKYPISDH YSSDQVSQLI  180
QSLELNFSIF QERLRIVESK KHKETKLDHQ SLASSSLNHQ QDQHLQTQSL NPSQFSLIMY  240
NHGDNSFSQI PVSASNFNQD FSALLQESEL KNHLMKQELC GYGQNMCMSD ITNNNFQYSC  300
VSNKEAVQES MNNFGLNQLM QKQFYGCNQN MCMGNINSNN FQHPCVSNTE HYSAVQESVN  360
NIGLNQLMQH ELYGYDQNMC TSHITNSNVP DPGLSNTVSY GFCSDYQDSC GNNMVGNTSF  420
SQNLSDMSSN YVFNFDESSL FQTSTLPSLS TIPNSYLLSD NSRFL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.3751s0043.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872955.1	0.0	agamous-like MADS-box protein AGL75
Swissprot	Q9FLL0	1e-156	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	D7MJI6	0.0	D7MJI6_ARALL; Predicted protein
STRING	Bostr.3751s0043.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41200.1	1e-154	AGAMOUS-like 75

Link Out ? help Back to Top
Phytozome	Bostr.3751s0043.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]