PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.3751s0031.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25937.2 Da PI: 10.4547 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.8 | 7.7e-25 | 51 | 100 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 r++++s +++++s+R+++++KKA+ELS+LC++ev+vi+++++g l+++++ Bostr.3751s0031.1.p 51 RSSSYSLASTSLSNRLKTVFKKASELSILCEVEVCVIYYGPDGGLKTWPK 100 89**********************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.6E-4 | 45 | 101 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.1E-14 | 59 | 98 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.456 | 60 | 102 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.02E-15 | 60 | 134 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
PLILLVLLYH FCINTLHHMS WNRVLHLLER IEVEAARLPK FVSEITMRSS RSSSYSLAST 60 SLSNRLKTVF KKASELSILC EVEVCVIYYG PDGGLKTWPK EKEKVKDLAL RYSQLTEALR 120 RKKSVNLYGF LNKKKIKNLK NLNKERKTGL KKVNGLKYPI SDHYSSDKVS QLIQSLELNF 180 SKFQERLLFV ESKKHKETKL DHQSLALSTL NHQHLQTQSL NPSQ* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.3751s0031.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002870726.2 | 6e-80 | agamous-like MADS-box protein AGL75 | ||||
Swissprot | Q9FIX0 | 2e-72 | AGL81_ARATH; Agamous-like MADS-box protein AGL81 | ||||
TrEMBL | D7MJH9 | 3e-85 | D7MJH9_ARALL; Uncharacterized protein | ||||
STRING | Bostr.3751s0031.1.p | 1e-161 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G40220.1 | 3e-69 | AGAMOUS-like 43 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.3751s0031.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|