PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.3751s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 314aa MW: 35833.6 Da PI: 8.8346 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.9 | 6.3e-24 | 5 | 53 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 r++++s +++++s+R+++++KKA+ELS+LC++ev+vi ++++g+l+++ Bostr.3751s0030.1.p 5 RSSSYSLASTSLSNRLKTVFKKASELSILCEVEVCVIHYGPDGELKTWT 53 89**********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.017 | 1 | 56 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.7E-4 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.2E-14 | 13 | 52 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.19E-15 | 14 | 88 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MRSSRSSSYS LASTSLSNRL KTVFKKASEL SILCEVEVCV IHYGPDGELK TWTKEKEKVK 60 DMALRYSQLT EALRRKKSVN LYGFLNKKKI KNLKNLNKEK KTSLKKVNGL KYPISDHYSS 120 DQVSQLIQSL ELNFSKFQER LLFVESQKYK ETKLDHQSLA SSTLNHQHLQ TQSLNPSQFS 180 LIMYNHGDNT FSQIPVSASN FNQDFLALLQ ESELKKKQEL CGYDQNMCMS DITNNNFQHP 240 CISNKEAVQE SANNFGLNQL MQKEFYGCDQ NMCMGNINSN NFQHPCVSEN YSAVQESVNN 300 IGLNQLMQHG LYG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.3751s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020872955.1 | 1e-159 | agamous-like MADS-box protein AGL75 | ||||
Swissprot | Q9FLL0 | 1e-152 | AGL75_ARATH; Agamous-like MADS-box protein AGL75 | ||||
TrEMBL | D7MJI6 | 1e-159 | D7MJI6_ARALL; Predicted protein | ||||
STRING | Bostr.3751s0030.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41200.1 | 1e-145 | AGAMOUS-like 75 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.3751s0030.1.p |
Publications ? help Back to Top | |||
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