PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3640s0147.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 254aa    MW: 28375.9 Da    PI: 7.4716
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3640s0147.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.7e-172673148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEde+lv  +k+ G g+W++ +++ g+ R++k+c++rw +yl
  Bostr.3640s0147.1.p 26 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 73
                         89******************************99************97 PP
2Myb_DNA-binding49.31.2e-1580124248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          g  T +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Bostr.3640s0147.1.p  80 GGITSDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 124
                          56699****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-221776IPR009057Homeodomain-like
PROSITE profilePS5129416.5032173IPR017930Myb domain
SuperFamilySSF466892.82E-2922120IPR009057Homeodomain-like
SMARTSM007172.0E-132575IPR001005SANT/Myb domain
PfamPF002497.3E-152673IPR001005SANT/Myb domain
CDDcd001671.37E-112873No hitNo description
PROSITE profilePS5129424.08774128IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2477128IPR009057Homeodomain-like
SMARTSM007171.1E-1478126IPR001005SANT/Myb domain
PfamPF002494.0E-1481124IPR001005SANT/Myb domain
CDDcd001677.18E-1283124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MMSSCGGKKP VSKKTTPCCT KMGMKRGPWT VEEDEILVSF IKKEGEGRWR SLPKRAGLLR  60
CGKSCRLRWM NYLRPSVKRG GITSDEEDLI LRLHRLLGNR WSLIAGRIPG RTDNEIKNYW  120
NTHLRKKLLR QGIDPQTHKP LDVNNIHKPE EEVSSGQNPL EPNSSSHTDT TVNSGDGAGK  180
NSINVFGGGD DYEDFGFCYD DKFSSFLNSL INDDDDPFGN IIPISQPLHM DDCTNEIVGA  240
SSSLGHDQRQ ENI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27241285108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3640s0147.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195870.0AY519587.1 Arabidopsis thaliana MYB transcription factor (At3g13540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500684.11e-171PREDICTED: transcription repressor MYB5 isoform X1
SwissprotQ388501e-163MYB5_ARATH; Transcription repressor MYB5
TrEMBLD7L1F41e-164D7L1F4_ARALL; Uncharacterized protein
STRINGBostr.3640s0147.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-152myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]