PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3640s0078.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 444aa    MW: 49081.4 Da    PI: 6.2852
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3640s0078.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.5e-31234288155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr+rWtpeLHe+Fv+ v +L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl
  Bostr.3640s0078.1.p 234 KPRMRWTPELHESFVNSVIKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 288
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-29232289IPR009057Homeodomain-like
SuperFamilySSF466899.32E-16233288IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-23234289IPR006447Myb domain, plants
PfamPF002491.7E-7236287IPR001005SANT/Myb domain
PfamPF143792.2E-22324371IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MNRHSLVSTA PDECNKGVGQ ACSSSLSPVH NFLNVETHKS PFIRSQSPDS PGHLWSKNSS  60
RSTFSRSSTF CTNLYLSSSS TSETQKHLGN SLPFLPDPSS YSHSASGVES ARSPSTFSED  120
LGNPYDGDSS GSLVKDFLNL SGDACSDGGF HDFGCSNDSY CISDQMELQF LSDELELAIT  180
DRAETPRLDE IYETPLASSN PVTRLSPSQS FVAGAMSIDV VSSHRSPGSA ANHKPRMRWT  240
PELHESFVNS VIKLEGPEKA TPKAVLKLMN VEGLTIYHVK SHLQKYRLAK YMPEKKEEKK  300
NDNAEEKKLA LSNSEADEKK KGAIQLTEAL RMQMEVQKQL HEQLEVQRGL QLRIEEHAKY  360
LEKMLEEQRK TGKLISSSSS QTVLSPSDDS IPDSQNMSKT EASSPQPSSS AKNKAWETED  420
DKCESPQKRR RLENKAESED PKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-23234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-23234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-23234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-23234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-23234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-23234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-23234291259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-23234291259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1427431KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3640s0078.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0508890.0AY050889.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
GenBankAY0966740.0AY096674.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499814.10.0PREDICTED: myb family transcription factor PHL6-like
RefseqXP_010499823.10.0PREDICTED: myb family transcription factor PHL6-like
RefseqXP_010499830.10.0PREDICTED: myb family transcription factor PHL6-like
RefseqXP_010499839.10.0PREDICTED: myb family transcription factor PHL6-like
RefseqXP_019101525.10.0PREDICTED: myb family transcription factor PHL6-like
SwissprotQ949U20.0PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLR0HYE10.0R0HYE1_9BRAS; Uncharacterized protein
STRINGBostr.3640s0078.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67862744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.20.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]