PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3640s0047.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 296aa    MW: 33302.8 Da    PI: 8.4981
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3640s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.24e-182673148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W++eEde+l+++++ +G ++W+++++  g+ R++k+c++rw +yl
  Bostr.3640s0047.1.p 26 RGLWSPEEDEKLLRYITTHGHPSWSSVPKLAGLQRCGKSCRLRWINYL 73
                         788*******************************************97 PP
2Myb_DNA-binding52.71e-1679122146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++ +eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Bostr.3640s0047.1.p  79 RGSFNAEEEQIIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 122
                          899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-241875IPR009057Homeodomain-like
PROSITE profilePS5129417.6532173IPR017930Myb domain
SuperFamilySSF466897.99E-2924120IPR009057Homeodomain-like
SMARTSM007171.1E-122575IPR001005SANT/Myb domain
PfamPF002491.3E-152673IPR001005SANT/Myb domain
CDDcd001676.06E-112973No hitNo description
PROSITE profilePS5129425.93674128IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2576128IPR009057Homeodomain-like
SMARTSM007173.2E-1578126IPR001005SANT/Myb domain
PfamPF002495.9E-1579122IPR001005SANT/Myb domain
CDDcd001671.84E-1181121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKMKEKWEMK RDEMGHRCCG KHKVKRGLWS PEEDEKLLRY ITTHGHPSWS SVPKLAGLQR  60
CGKSCRLRWI NYLRPDLRRG SFNAEEEQII IDVHRILGNK WAQIAKHLPG RTDNEVKNFW  120
NSCIKKKLLS QGLDPSTHNL MPSHKRSSSS NNNTISKPNK TTSIMKNPTD LDQTTTAFSI  180
TNINPSTSTK PNRLKSPVRT LIPSQTMIPI NDTVSSLLDD ENMIPHWSNV DGIAIHEAPT  240
LPGDKSVVGA DDDDLNMDIL FSTPSSSAFD PDFASIFSSG MSIDFNPMDD LGWTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-30261287108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3640s0047.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0395540.0AY039554.1 Arabidopsis thaliana AT3g12720/MBK21_8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884922.10.0transcription factor MYB61
TrEMBLD7L0J70.0D7L0J7_ARALL; Uncharacterized protein
STRINGBostr.3640s0047.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79552539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.10.0myb domain protein 67