PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3359s0126.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 493aa    MW: 54917.1 Da    PI: 4.5546
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3359s0126.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34451372103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+++++++sws+n+nsf+v+d+  fa+++Lpk Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+ + F +g+k
  Bostr.3359s0126.1.p  45 FLSKTYDMVDDPATDSIVSWSANNNSFIVWDPPLFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFASEGFLRGQK 125
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r+k +
  Bostr.3359s0126.1.p 126 HLLKTITRRKPA 137
                          ********9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.8E-3839129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-6041134IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.67E-3541134IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-3045134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-194568IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-198395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-1996108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDGVSSKVFT SDGGGGSVTT ESMEIKPSPQ PQPAPILSSN APPPFLSKTY DMVDDPATDS  60
IVSWSANNNS FIVWDPPLFA RDLLPKNFKH NNFSSFVRQL NTYGFRKVDP DRWEFASEGF  120
LRGQKHLLKT ITRRKPAQGH GHGHQQSQHS NGQNASVSAC VEVGKFGLEE EVERLKRDKN  180
VLMQELVRLR QQQQSTDNQL QTMVQRLQGM ENRQQQLMSF LAKAVQSPHF LSQLLQQQNQ  240
QNESSRRISD TNKKRRFKRD GIVGNNDSAS PDGQIVKYQP PMHEQAKAMF EQLMKMEPYK  300
TGDDGFLLGN GTSTTEGTEM ETSSNHASGI TLQEMPTASE IQSSSPIGTT PENVSAAPEA  360
TENCILSPDD LTLPEFTHML PENKAEQPPE NFMEPNMGGS SPFLDPDLLI NDSLPFDIDD  420
FPVDPDIDPV DYALLEDLLM SSPVPDNMDL TPVDNETEQK QNGWDKTKHM DNLTQQMGLL  480
SPETIDLSRQ NP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-254313418120Heat shock factor protein 1
5d5u_B9e-254313427129Heat shock factor protein 1
5d5v_B9e-254313427129Heat shock factor protein 1
5d5v_D9e-254313427129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251258NKKRRFKR
2252257KKRRFK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3359s0126.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0841100.0AC084110.4 Arabidopsis thaliana chromosome 1 BAC F27G20 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D140.0AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867922.10.0heat stress transcription factor A-1d
SwissprotQ9LQM70.0HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLD7KHI80.0D7KHI8_ARALL; ATHSFA1D
STRINGBostr.3359s0126.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.10.0heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]