PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.3359s0086.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

SRS

Protein Properties

Length: 328aa MW: 36687.6 Da PI: 8.9996

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.3359s0086.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	26.4	2e-08	28	92	5	68
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....a 68 + +C +CGn a+ C ++ C+ CC + C hv +a e++q+ +++ss+++as+ + Bostr.3359s0086.1.p 28 KPKCIQCGNVARSRCPFQSCKGCCSRAENPCPIHVLKV---VATPGEKMQAPSTPSSDQKASEgtpgT 92 568*******************************9653...333444444444444444443322332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.5E-6	30	102	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MATSSPSLSN NGLSAVVTPP KTLRGLNKPK CIQCGNVARS RCPFQSCKGC CSRAENPCPI 60 HVLKVVATPG EKMQAPSTPS SDQKASEGTP GTTTRVSSIR QLSSNFAQFN NLNASSRQRK 120 PLTIKDAQAL NEWRFTKLKE YRDRNIEVEN EAFDRYMSNV NLLEEAFSFT SVPDEEVPGA 180 AASEQNNEER KVSELKLWLR SNSARAEIFK KRITETVKAG LFQLQKPEYC SFSDDQDEIK 240 RRTKRKKWEE KGSAWNEIID KLNKARTEED LKSCLEMKSK LCGQVTSAAA SEMNKVLPGF 300 VRKVEISEEA LQRIGEHLQS FDKVETL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.3359s0086.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493492	0.0	AB493492.1 Arabidopsis thaliana At1g32730 mRNA for hypothetical protein, partial cds, clone: RAAt1g32730.
GenBank	AY084750	0.0	AY084750.1 Arabidopsis thaliana clone 116730 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010499828.1	0.0	PREDICTED: uncharacterized protein LOC104777305
TrEMBL	A0A178WNL1	0.0	A0A178WNL1_ARATH; Uncharacterized protein
TrEMBL	Q9LPJ1	0.0	Q9LPJ1_ARATH; Electron carrier/iron ion-binding protein
STRING	Bostr.3359s0086.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7362	13	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	0.0

Link Out ? help Back to Top
Phytozome	Bostr.3359s0086.1.p