PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3359s0074.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 534aa    MW: 59666.4 Da    PI: 4.8781
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3359s0074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.94.3e-49101351128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelvv+yLk+k+++kkl++ ++i e+d+yk++P+dLp k  +k+++++w+fFs rdkk+  g+r++rat sgyWkatgk
  Bostr.3359s0074.1.p  10 LAPGFRFHPTDEELVVYYLKRKIRRKKLRV-DAIGETDVYKFDPEDLPeKaLYKTRDRQWFFFSLRDKKH--GSRSSRATGSGYWKATGK 96 
                          579***************************.99**************95345667899*********985..89**************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+ +++ +++ vg kktLvf++grap+ge+t+Wvmhey+l
  Bostr.3359s0074.1.p  97 DRVIKC-DSRPVGEKKTLVFHRGRAPNGERTNWVMHEYTL 135
                          ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-559160IPR003441NAC domain
PROSITE profilePS5100553.19310160IPR003441NAC domain
PfamPF023651.3E-2612135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010224Biological Processresponse to UV-B
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:1900409Biological Processpositive regulation of cellular response to oxidative stress
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MDLTGEKGAL APGFRFHPTD EELVVYYLKR KIRRKKLRVD AIGETDVYKF DPEDLPEKAL  60
YKTRDRQWFF FSLRDKKHGS RSSRATGSGY WKATGKDRVI KCDSRPVGEK KTLVFHRGRA  120
PNGERTNWVM HEYTLHEEEL KRCGGGDVKD AYVLYKIYKK SGSGPKNGEQ YGAPFIEEEW  180
AEDGDDVDEP ANVVDVPANQ LTVSADVDNN LWAKGLNQSE LDDNDIEELM RQIIDQPGPT  240
VQLNGVSGLN SHEEIYNPVN LENDMYLEMD DLLLPEPEPT SVKAMQKNWN QDSSGVPNDN  300
DFVDADSYFL DLGATNLQSD PVSGPFENGF EQSLQMNTSL VTDQANNNQF QQQTRKYQAS  360
NWPLRNSYIR QMNNGSSWMQ ELNNDRLTAA QFGEAPGTGD ASEFIKPLTS GISITKEDEA  420
TKAESSQFAS SLWAFLESIP SDPAYASENP FISMNLVRMS SSGGRFRFAS KSTGNNFVVT  480
VSDSAAKRKK SGGNNDKKNK NKGFFCLSII GALCALFWVI IGTMGVSGRS LLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-45916616171NO APICAL MERISTEM PROTEIN
1ut4_B6e-45916616171NO APICAL MERISTEM PROTEIN
1ut7_A6e-45916616171NO APICAL MERISTEM PROTEIN
1ut7_B6e-45916616171NO APICAL MERISTEM PROTEIN
3swm_A6e-45916619174NAC domain-containing protein 19
3swm_B6e-45916619174NAC domain-containing protein 19
3swm_C6e-45916619174NAC domain-containing protein 19
3swm_D6e-45916619174NAC domain-containing protein 19
3swp_A6e-45916619174NAC domain-containing protein 19
3swp_B6e-45916619174NAC domain-containing protein 19
3swp_C6e-45916619174NAC domain-containing protein 19
3swp_D6e-45916619174NAC domain-containing protein 19
4dul_A6e-45916616171NAC domain-containing protein 19
4dul_B6e-45916616171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13037KIRRKKLR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in oxidative stress tolerance by mediating regulation of mitochondrial retrograde signaling during mitochondrial dysfunction. Interacts directly with the mitochondrial dysfunction DNA consensus motif 5'-CTTGNNNNNCA[AC]G-3', a cis-regulatory elements of several mitochondrial retrograde regulation-induced genes, and triggers increased oxidative stress tolerance. {ECO:0000269|PubMed:24045019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00176DAPTransfer from AT1G32870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3359s0074.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat, salt stress, abscisic acid (ABA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307217.10.0NAC domain-containing protein 13
SwissprotF4IED20.0NAC13_ARATH; NAC domain-containing protein 13
TrEMBLR0IN970.0R0IN97_9BRAS; Uncharacterized protein
STRINGBostr.3359s0074.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153171517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32870.10.0NAC domain protein 13
Publications ? help Back to Top
  1. Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y
    Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress.
    Plant Cell, 2014. 26(12): p. 4656-79
    [PMID:25549671]
  2. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]