PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.3359s0059.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 675aa MW: 76541.5 Da PI: 6.5976 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.7 | 4.6e-53 | 29 | 156 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++k+ePwdLp + +k++++ew+fF++rd+ky++g+r+nrat+ gyWkatgk Bostr.3359s0059.1.p 29 LPLGFRFRPTDEELINHYLRLKINGRDSEV-RVIPEIDVCKWEPWDLPglSVIKTDDQEWFFFCPRDRKYPSGHRSNRATDIGYWKATGK 117 699************************999.99***************6448899999******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++s k+ +g+kktLvfy+grap+ge+t+W+mheyr+ Bostr.3359s0059.1.p 118 DRTIKS-KKIIIGMKKTLVFYRGRAPRGERTNWIMHEYRA 156 ******.9999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-63 | 20 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.36 | 29 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-27 | 30 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence Send to blast |
MNQRRKKKQE NETLPEMTTE QALLSMEALP LGFRFRPTDE ELINHYLRLK INGRDSEVRV 60 IPEIDVCKWE PWDLPGLSVI KTDDQEWFFF CPRDRKYPSG HRSNRATDIG YWKATGKDRT 120 IKSKKIIIGM KKTLVFYRGR APRGERTNWI MHEYRATDKE LDGTGPGQNP YVLCRLFHKP 180 SDSCDTANCD EIENVNTTPT TTRCSPDDTS SEMVQETATS RVHALNRSDD TERCLSDKSN 240 DVKPDVSVIN NTSINHAESS RAKDRVLGKT IIEENPLARD ISTHYGPSFT QMNDRTYYPA 300 QSSIDFPAAH MDSMYSSDFG NFDYGLHFQD GAAIQDASLT DVLDEVFHNS NDSSTERKDF 360 ALPNMMHWPG NTRLLSTEYP FRKDAVAFVD GSAEVASPQF VPENVAPRWV SEHLVDSKEV 420 VEIRSSSGSS RTVTPLHSNV LGQYASASYA SIDPFNYNVN HPEQSFFEQS PVDRKISPSD 480 ISGFKARSRE NQTNQDFVVD QGTAPRRIRL LIEQPLTPVN HKKEGDADNY EEDEVQSAMS 540 KVVEVNERCF LNGDMTGVKG HDSLSESAKL RTQGTAQRRI HLQTRLLKPP ITLNTGRHSN 600 RSDEETSHRK EKEDVSSSSW QKQKKIVKKS LVQYSSMVII MAVIVVLVGV WKESRDAKCS 660 FLFHQLDSLK GMFT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-45 | 24 | 183 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-45 | 24 | 183 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-45 | 24 | 183 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-45 | 24 | 183 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-45 | 24 | 183 | 15 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-45 | 24 | 183 | 15 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-45 | 24 | 183 | 15 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-45 | 24 | 183 | 15 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-45 | 24 | 183 | 15 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-45 | 24 | 183 | 15 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-45 | 24 | 183 | 15 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-45 | 24 | 183 | 15 | 172 | NAC domain-containing protein 19 |
4dul_A | 1e-45 | 24 | 183 | 12 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-45 | 24 | 183 | 12 | 169 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.3359s0059.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT046189 | 0.0 | BT046189.1 Arabidopsis thaliana unknown protein (At1g33060) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010499853.1 | 0.0 | PREDICTED: NAC domain-containing protein 14-like | ||||
Swissprot | B5X570 | 0.0 | NAC14_ARATH; NAC domain-containing protein 14 | ||||
TrEMBL | R0IMJ6 | 0.0 | R0IMJ6_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.3359s0059.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5594 | 28 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 0.0 | NAC 014 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.3359s0059.1.p |