PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.3359s0057.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HSF | ||||||||
Protein Properties | Length: 128aa MW: 14937.7 Da PI: 6.2697 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 60.2 | 5.6e-19 | 15 | 95 | 2 | 91 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 F kkly++++d+++++++sws++g+sf+v++e+ef ++vLp++ + +++a F+ L gFkk+++e+ we+ ++ F +g+ Bostr.3359s0057.1.p 15 FRKKLYKMVDDPSTDSVVSWSDSGKSFIVWNETEFCRDVLPRFSQYKEMAPFISRLTRMGFKKIESEH---------WEYGNDDFVRGHP 95 889**************************************************************999.........9999999999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.5E-24 | 10 | 96 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.7E-26 | 11 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.16E-22 | 14 | 96 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.8E-19 | 15 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.5E-10 | 15 | 38 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.5E-10 | 53 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.5E-10 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MDRDSSNPIH NSRYFRKKLY KMVDDPSTDS VVSWSDSGKS FIVWNETEFC RDVLPRFSQY 60 KEMAPFISRL TRMGFKKIES EHWEYGNDDF VRGHPEPEVD LTPEEVSARL KELASSLRKT 120 QADRVQV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-14 | 11 | 87 | 25 | 99 | Heat shock factor protein 1 |
5d5v_B | 2e-14 | 11 | 87 | 25 | 99 | Heat shock factor protein 1 |
5d5v_D | 2e-14 | 11 | 87 | 25 | 99 | Heat shock factor protein 1 |
5d5w_B | 2e-14 | 15 | 100 | 4 | 93 | Putative transcription factor |
5d5x_B | 2e-14 | 15 | 100 | 4 | 93 | Putative transcription factor |
5d5x_E | 2e-14 | 15 | 100 | 4 | 93 | Putative transcription factor |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.3359s0057.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873596.2 | 2e-29 | heat stress transcription factor A-4a | ||||
TrEMBL | R0GQ12 | 3e-48 | R0GQ12_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.3359s0057.1.p | 2e-90 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13231 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18870.1 | 3e-26 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.3359s0057.1.p |